ViewGene
Locus Name:
GeneID:
Location:

GeneID:432
TrivialName: PA14_01070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01070
PAO1 Ortholog Locus:PA0088
Sequence Length:1860
Protein Length:619
Start: 103012
Stop: 104871
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03478.1|AE004447_11 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 617/619 (99%), Positives = 618/619 (99%)
Sequence:
ATGAACCCGCGCCTGCTCGAGTACTACAACCAGGAATTGCAACACATCCGCGAAAGCGCCGCGGAGTTCGCC
GAGGAGTTCCCGAAGATCGCCGGGCGCCTGTCGCTGTCCGGCTTCGAGTGCGCCGACCCCTACGTCGAGCGC
CTGCTGGAAGGCTTCGCCTATCTCACCGCGCGGGTCCAGCTGAAGCTCGACGCGGAGTACCCGACCTTCACC
CACAACCTGCTGGAAATCGCCTACCCGCACTACCTGGCGCCGACTCCGTCGATGACCGTGGTGCAGCTGCGC
CCGGACCCCAACGAAGGCGCCCTGAGCAGCGGCTTCAGCGTCGAGCGCGGGGCCTCCCTGCGCGGCCAGCTC
GGCCCCGATGACCAGACCGCCTGCGAATACCGCACCGCCCACCCGGTGACCCTGTGGCCGCTGGAAGTGGCC
CAGGCCGACTACTTCGGCAATCCCGCCGCGGTGCTCGGCCGCCTCGCCGCCAGCGAGCCGCGGGCCAAGGCC
GGCCTGCGCATCCGCCTGCGCAGCGGCGCCGGTATCCCGTTCGACAGCCTGTCGCTGGACGCCCTGCCGCTC
TACCTGCACGGCGCCGACGAACAACCCTACCGCCTCTACGAACAATTGCTCGGCAACGCCTGCGCGGTGTTC
GTCCGCGCCCCGGACAATGCCTGGGTCGAACGCCTGCCGACGAGCAGCCTGCGTGCGCGTGGCTTCGACGAC
GAGGACGCGCTGCTGCCGGTGGTGCCGCGGGCGTTCCAGGGCTACCGCCTGCTGCAGGAATACTTCGCCCTG
CCGGCGCGCTTCCTGTTCGTCGAGTTCTCCGGCCTGAACCGCGCCCTGCGTCGATGCCACGGCGAGGAGCTG
GAACTGGTCGTGCTGTTCGGCAAGCACGACCAGCGCCTGGAGGGCACGGTGGACGCGGAGCAACTGGTGCCG
TTCTGCACCCCGGCGATCAACCTGTTCCCGCGCCGCTGCGACCGCATCCACCTGTCCGACCGGGTCAACGAG
CATCATGTGATCGTCGACCGCACCCGTCCGCTGGATTTCGAGGTGCATTCGCTGCAACAGGTGAGCGGCCAC
GGCAGCGGTCCGGAGCAACCCTTCCAACCGTTCTACGCGGTGCGCGACCCGGCGCGCTACGGCCGCGAGCAG
GCCTACTTCAGCGTGCGCCGCGAACCGCGCGTGCTGTCCAGCAAGCAGCGGCGCAAGGGCCCGCGCTCGACC
TACGTCGGCAGCGAGACCTTCGTCGCCCTGGTCGACGCCAACCAGGCGCCCTATCGCCACGACCTGCGCCAG
CTCGGCATCGCCGCGCTGTGCACCAACCGCGACCTGCCGCTGTTCATGCCGATCGGCGCGCACAAGAGCGAC
TTCACCCTGGAGGACAGCGCCCCGGTCATGCAGGTGCGCTGCCTCGCCGGACCGAGCCGGCCGCGCGCCAGC
CGTGCCCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTGTCGCTGAACTACCTGTCGTTGGCCGAGCGC
GGCCAGGGCGCCGCCGCCCTGCGCGAGCTGCTGCGGCTCTACGGCGACAGCGGCGATCCGGCGCTGCAACTG
CAGATCGAGGGCCTGCGCGAGGTCAGCAGCAAGCCTTGCACGCGGCGCCTGCCGATGCCCGGGCCGATCGTC
TTCGGCCGTGGCCTGGAGATCACCCTGGACTTCGACGAGAACGCGTTCCGTGGCACCGGGGTGTTCCTCCTC
GGCGCCGTGTTCGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGCTGCGCACC
GGCGAACGGGGCGAGGTGATGAGATGGCAGGCGAAGCCGGGCAGCCGTCCGAACCTCTGA
Translation:
MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARVQLKLDAEYPTFT
HNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQLGPDDQTACEYRTAHPVTLWPLEVA
QADYFGNPAAVLGRLAASEPRAKAGLRIRLRSGAGIPFDSLSLDALPLYLHGADEQPYRLYEQLLGNACAVF
VRAPDNAWVERLPTSSLRARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEEL
ELVVLFGKHDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHSLQQVSGH
GSGPEQPFQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVGSETFVALVDANQAPYRHDLRQ
LGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCLAGPSRPRASRAHDASAWRLISQLSLNYLSLAER
GQGAAALRELLRLYGDSGDPALQLQIEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLL
GAVFERFLARYVSINSFTETVLRTGERGEVMRWQAKPGSRPNL*
AnnotationID:441GeneID:432
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0088
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18009




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33444




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:432_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:432
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
724
                           PA0088_tr
                           translation of PA0088
                           619
                           99.67
                           99.83
                           0
                           3219.0
     

     
     
32512
                           gb|AAG03478.1|AE004447_11
                           (AE004447) hypothetical protein PA0088 [Pseudomonas aeruginosa PAO1]
                           619
                           99.67
                           99.83
                           0
                           3219.0
     

     
     
32513
                           gb|AAM38977.1|
                           (AE012064) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           627
                           57.25
                           70.65
                           8
                           1803.0
     

     
     
32514
                           emb|CAE40128.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           642
                           48.44
                           62.61
                           28
                           1499.0
     

     
     
32515
                           emb|CAE31304.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           642
                           48.44
                           62.46
                           28
                           1498.0
     

     






      

          
GC ORFID: 43434How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0088Glimmer Score: 

          
Start: 5904351Stop: 5906210

          
Length: 1860


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0088 translation of PA0088Homolog Bit Score 1244.0

          
Other Homologs:  t_PA0088 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCGCGCCTGCTCGAGTACTACAACCAGGAATTGCAACACATCCGCGAAAGCGCCGCGGAGTTCGCC 
GAGGAGTTCCCGAAGATCGCCGGGCGCCTGTCGCTGTCCGGCTTCGAGTGCGCCGACCCCTACGTCGAGCGC 
CTGCTGGAAGGCTTCGCCTATCTCACCGCGCGGGTCCAGCTGAAGCTCGACGCGGAGTACCCGACCTTCACC 
CACAACCTGCTGGAAATCGCCTACCCGCACTACCTGGCGCCGACTCCGTCGATGACCGTGGTGCAGCTGCGC 
CCGGACCCCAACGAAGGCGCCCTGAGCAGCGGCTTCAGCGTCGAGCGCGGGGCCTCCCTGCGCGGCCAGCTC 
GGCCCCGATGACCAGACCGCCTGCGAATACCGCACCGCCCACCCGGTGACCCTGTGGCCGCTGGAAGTGGCC 
CAGGCCGACTACTTCGGCAATCCCGCCGCGGTGCTCGGCCGCCTCGCCGCCAGCGAGCCGCGGGCCAAGGCC 
GGCCTGCGCATCCGCCTGCGCAGCGGCGCCGGTATCCCGTTCGACAGCCTGTCGCTGGACGCCCTGCCGCTC 
TACCTGCACGGCGCCGACGAACAACCCTACCGCCTCTACGAACAATTGCTCGGCAACGCCTGCGCGGTGTTC 
GTCCGCGCCCCGGACAATGCCTGGGTCGAACGCCTGCCGACGAGCAGCCTGCGTGCGCGTGGCTTCGACGAC 
GAGGACGCGCTGCTGCCGGTGGTGCCGCGGGCGTTCCAGGGCTACCGCCTGCTGCAGGAATACTTCGCCCTG 
CCGGCGCGCTTCCTGTTCGTCGAGTTCTCCGGCCTGAACCGCGCCCTGCGTCGATGCCACGGCGAGGAGCTG 
GAACTGGTCGTGCTGTTCGGCAAGCACGACCAGCGCCTGGAGGGCACGGTGGACGCGGAGCAACTGGTGCCG 
TTCTGCACCCCGGCGATCAACCTGTTCCCGCGCCGCTGCGACCGCATCCACCTGTCCGACCGGGTCAACGAG 
CATCATGTGATCGTCGACCGCACCCGTCCGCTGGATTTCGAGGTGCATTCGCTGCAACAGGTGAGCGGCCAC 
GGCAGCGGTCCGGAGCAACCCTTCCAACCGTTCTACGCGGTGCGCGACCCGGCGCGCTACGGCCGCGAGCAG 
GCCTACTTCAGCGTGCGCCGCGAACCGCGCGTGCTGTCCAGCAAGCAGCGGCGCAAGGGCCCGCGCTCGACC 
TACGTCGGCAGCGAGACCTTCGTCGCCCTGGTCGACGCCAACCAGGCGCCCTATCGCCACGACCTGCGCCAG 
CTCGGCATCGCCGCGCTGTGCACCAACCGCGACCTGCCGCTGTTCATGCCGATCGGCGCGCACAAGAGCGAC 
TTCACCCTGGAGGACAGCGCCCCGGTCATGCAGGTGCGCTGCCTCGCCGGACCGAGCCGGCCGCGCGCCAGC 
CGTGCCCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTGTCGCTGAACTACCTGTCGTTGGCCGAGCGC 
GGCCAGGGCGCCGCCGCCCTGCGCGAGCTGCTGCGGCTCTACGGCGACAGCGGCGATCCGGCGCTGCAACTG 
CAGATCGAGGGCCTGCGCGAGGTCAGCAGCAAGCCTTGCACGCGGCGCCTGCCGATGCCCGGGCCGATCGTC 
TTCGGCCGTGGCCTGGAGATCACCCTGGACTTCGACGAGAACGCGTTCCGTGGCACCGGGGTGTTCCTCCTC 
GGCGCCGTGTTCGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGCTGCGCACC 
GGCGAACGGGGCGAGGTGATGAGATGGCAGGCGAAGCCGGGCAGCCGTCCGAACCTCTGA