ViewGene
Locus Name:
GeneID:
Location:

GeneID:4319
TrivialName: PA14_66630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66630
PAO1 Ortholog Locus:PA5041
Sequence Length:525
Protein Length:174
Start: 5949826
Stop: 5949302
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08426.1|AE004917_5 (AE004917) type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa PAO1]
Identities = 162/174 (93%), Positives = 168/174 (96%)
Sequence:
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTC
GGCGATCTTCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTT
CAGCCATATGAAGCTTTTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGAC
CTGACCGTGCGGCAGAAAGGCAACAAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGT
TTCAACATCGAAACCTTCGAGATGGTCGGCACACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGC
GCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGGGACGCAACGACGGCAAGGTCGTCGGCATCAGC
GAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAACTGGCTGGAGCGTCCGCGCAGCCTG
ACTCTCAAGGAACGCTCCTGA
Translation:
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKID
LTVRQKGNKVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGIS
EGKIDVIEIVPDGEGNWLERPRSLTLKERS*
AnnotationID:4325GeneID:4319
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 17:05:32
Gene Name:pilP
Confidence Code:1
GeneProduct:type 4 fimbrial biogenesis protein PilP
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:fimbrial assembly protein
Functional Category Confidence Code:5
COGs:pfam04351
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA93089.1| (L28837) pilus expression protein [Pseudomonas syringae]
          Length = 175

 Score =  258 bits (659), Expect = 1e-68
 Identities = 121/172 (70%), Positives = 149/172 (86%)

>gb|AAO58556.1| (AE016874) type IV pilus biogenesis protein PilP [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 175

 Score =  256 bits (655), Expect = 3e-68
 Identities = 120/172 (69%), Positives = 147/172 (85%)






 
Structural Features:
pfam04351, PilP, Pilus assembly protein, PilQ.
CD-Length = 147 residues, 100.0% aligned
Score =  210 bits (537), Expect = 5e-56
Identities = 80/147 (54%), Positives = 98/147 (66%), Gaps = 1/147 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8639




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25782




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35037




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4319_cdd.html


    		




 
URL:

















    ReferenceID:35848




  
Author/Investigator(s):
        Mol Microbiol. 1995 May;16(3):497-508.





  
Title:
        Characterization of a five-gene cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7565110


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):497-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565110









           
Homologs By Global Alignment 

           

       



     
Gene ID:4319
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6640
                           PA5041_tr
                           translation of PA5041
                           174
                           93.10
                           96.55
                           0
                           840.0
     

     
     
178965
                           gb|AAG08426.1|AE004917_5
                           (AE004917) type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa PAO1]
                           174
                           93.10
                           96.55
                           0
                           840.0
     

     
     
178966
                           gb|AAA87405.1|
                           (U12892) pilP [Pseudomonas aeruginosa]
                           174
                           93.10
                           96.55
                           0
                           840.0
     

     
     
178967
                           gb|AAA93089.1|
                           (L28837) pilus expression protein [Pseudomonas syringae]
                           175
                           70.28
                           86.28
                           1
                           659.0
     

     
     
178968
                           gb|AAO58556.1|
                           (AE016874) type IV pilus biogenesis protein PilP [Pseudomonas syringae pv. tomato str. DC3000]
                           175
                           69.71
                           85.14
                           1
                           655.0
     

     






      

          
GC ORFID: 47321How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5041Glimmer Score: 

          
Start: 5213509Stop: 5212985

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5041 translation of PA5041Homolog Bit Score 328.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3293 (ORF: BLASTX 261.0), t_PA5041 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTC 
GGCGATCTTCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTT 
CAGCCATATGAAGCTTTTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGAC 
CTGACCGTGCGGCAGAAAGGCAACAAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGT 
TTCAACATCGAAACCTTCGAGATGGTCGGCACACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGC 
GCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGGGACGCAACGACGGCAAGGTCGTCGGCATCAGC 
GAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAACTGGCTGGAGCGTCCGCGCAGCCTG 
ACTCTCAAGGAACGCTCCTGA