ViewGene
Locus Name:
GeneID:
Location:

GeneID:4318
TrivialName: PA14_63350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63350
PAO1 Ortholog Locus:PA4794
Sequence Length:483
Protein Length:160
Start: 5652879
Stop: 5653361
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08180.1|AE004892_11 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 159/160 (99%), Positives = 160/160 (100%)
Sequence:
ATGCAGCTCAGCCACCGCCCGGCGGAGACCGGCGACCTGGAGACGGTCGCCGGCTTCCCCCAGGACCGCGAC
GAACTCTTCTATTGCTACCCCAAGGCGATCTGGCCGTTCAGCGTCGCCCAACTGGCCGCCGCCATCGCCGAA
CGTCGCGGCAGCACCGTGGCCGTGCACGACGGACAGGTGGTCGGCTTCGCCAACTTCTACCAGTGGCAGCAC
GGCGACTTCTGCGCCCTCGGCAACATGATGGTGGCGCCCGCCGCGCGCGGCCTGGGCGTGGCCCGCTACCTG
ATCGGGGTCATGGAAAACCTCGCCCGCGAACAGTACAAAGCGCGCCTGATGAAAATTTCCTGCTTCAACGCC
AACGCCGCCGGACTGCTGCTCTATACCCAGCTCGGCTACCAGCCGCGCGCCATCGCCGAACGCCACGATCCG
GACGGCCGGCGCGTGGCGCTGATCCAGATGGACAAGCCCCTTGAACCCTGA
Translation:
MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVVGFANFYQWQH
GDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDP
DGRRVALIQMDKPLEP*
AnnotationID:4324GeneID:4318
AnnotatorUID: diggins
Modification Date/Time: 2005-05-23 06:06:48
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA4794
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66455.1|AE016274_12 (AE016777) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 159

 Score =  179 bits (455), Expect = 4e-45
 Identities = 89/158 (56%), Positives = 112/158 (70%)

>gb|AAO57044.1| (AE016868) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 197

 Score =  141 bits (356), Expect = 1e-33
 Identities = 69/150 (46%), Positives = 97/150 (64%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 51.0 bits (122), Expect = 7e-08
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25780




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37695




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4318_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4318
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6639
                           PA4794_tr
                           translation of PA4794
                           160
                           99.37
                           99.99
                           0
                           840.0
     

     
     
178962
                           gb|AAG08180.1|AE004892_11
                           (AE004892) hypothetical protein PA4794 [Pseudomonas aeruginosa PAO1]
                           160
                           99.37
                           99.99
                           0
                           840.0
     

     
     
178963
                           gb|AAN66455.1|AE016274_12
                           (AE016777) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           160
                           55.62
                           70.00
                           1
                           454.0
     

     
     
178964
                           gb|AAO57044.1|
                           (AE016868) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           35.53
                           49.74
                           37
                           348.0
     

     






      

          
GC ORFID: 47320How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4794Glimmer Score: 

          
Start: 4916559Stop: 4917041

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4794 translation of PA4794Homolog Bit Score 328.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8001 (ORF: BLASTX 137.0), t_PA4794 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCTCAGCCACCGCCCGGCGGAGACCGGCGACCTGGAGACGGTCGCCGGCTTCCCCCAGGACCGCGAC 
GAACTCTTCTATTGCTACCCCAAGGCGATCTGGCCGTTCAGCGTCGCCCAACTGGCCGCCGCCATCGCCGAA 
CGTCGCGGCAGCACCGTGGCCGTGCACGACGGACAGGTGGTCGGCTTCGCCAACTTCTACCAGTGGCAGCAC 
GGCGACTTCTGCGCCCTCGGCAACATGATGGTGGCGCCCGCCGCGCGCGGCCTGGGCGTGGCCCGCTACCTG 
ATCGGGGTCATGGAAAACCTCGCCCGCGAACAGTACAAAGCGCGCCTGATGAAAATTTCCTGCTTCAACGCC 
AACGCCGCCGGACTGCTGCTCTATACCCAGCTCGGCTACCAGCCGCGCGCCATCGCCGAACGCCACGATCCG 
GACGGCCGGCGCGTGGCGCTGATCCAGATGGACAAGCCCCTTGAACCCTGA