ViewGene
Locus Name:
GeneID:
Location:

GeneID:4317
TrivialName: PA14_60570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60570
PAO1 Ortholog Locus:PA4578
Sequence Length:489
Protein Length:162
Start: 5398633
Stop: 5399121
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07966.1|AE004871_6 (AE004871) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGAAACGGATTCTGCTCGGTACCCTGTTCGCCGCCGCCTCCTTCAACGCTTTCGCCGACGCTCCCGGCGGC
GCCGGCTGCGGCTGGGGCAACATGCTCTTCAAAGGCCAGCGCGGCGTGGCCACCCACGTGGTCGCGGCGACC
ACCAACGGCACTTCCGGCAACAACACCTTCGGCATGACCACCGGCACCAACGGCTGCCATACCAACGGCGCG
CTGTCCTATGGCGGCAAGCCCCTGCTGGTGCTCGGCAGCATGATGGACGAGCTGTCCGAAGACATGGCCAAG
GGCAATGGCGAAGCGCTGACCACCTATGCCGTGGTGCTGGGCGTGCAACCGCAGGACCGCGAGCACTTCGCC
GCCGTCACCCACGAGCATTTCTCCGAGATCTTCAACAAGTCCGACGCCACCGCCGCCGACGTCTATGCCAAC
ACCCAGGCGATCCTGAAACAGGACGCCCGCCTGGCCAAGTACGCCGAGCAGGCCTGA
Translation:
MKRILLGTLFAAASFNAFADAPGGAGCGWGNMLFKGQRGVATHVVAATTNGTSGNNTFGMTTGTNGCHTNGA
LSYGGKPLLVLGSMMDELSEDMAKGNGEALTTYAVVLGVQPQDREHFAAVTHEHFSEIFNKSDATAADVYAN
TQAILKQDARLAKYAEQA*
AnnotationID:4323GeneID:4317
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4578
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25778




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4317
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6637
                           PA4578_tr
                           translation of PA4578
                           162
                           99.99
                           99.99
                           0
                           841.0
     

     
     
178958
                           gb|AAG07966.1|AE004871_6
                           (AE004871) hypothetical protein PA4578 [Pseudomonas aeruginosa PAO1]
                           162
                           99.99
                           99.99
                           0
                           841.0
     

     
     
178959
                           gb|AAO58032.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           185
                           64.86
                           71.89
                           23
                           632.0
     

     
     
178960
                           gb|AAN66304.1|AE016259_2
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           171
                           62.57
                           74.85
                           9
                           581.0
     

     
     
6638
                           PA4607_tr
                           translation of PA4607
                           169
                           54.43
                           69.82
                           8
                           500.0
     

     






      

          
GC ORFID: 47319How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4578Glimmer Score: 

          
Start: 4662313Stop: 4662801

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4578 translation of PA4578Homolog Bit Score 328.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5635 (ORF: BLASTX 250.0), t_PA4607 (ORF: BLASTX 197.0), t_PA4578 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGGATTCTGCTCGGTACCCTGTTCGCCGCCGCCTCCTTCAACGCTTTCGCCGACGCTCCCGGCGGC 
GCCGGCTGCGGCTGGGGCAACATGCTCTTCAAAGGCCAGCGCGGCGTGGCCACCCACGTGGTCGCGGCGACC 
ACCAACGGCACTTCCGGCAACAACACCTTCGGCATGACCACCGGCACCAACGGCTGCCATACCAACGGCGCG 
CTGTCCTATGGCGGCAAGCCCCTGCTGGTGCTCGGCAGCATGATGGACGAGCTGTCCGAAGACATGGCCAAG 
GGCAATGGCGAAGCGCTGACCACCTATGCCGTGGTGCTGGGCGTGCAACCGCAGGACCGCGAGCACTTCGCC 
GCCGTCACCCACGAGCATTTCTCCGAGATCTTCAACAAGTCCGACGCCACCGCCGCCGACGTCTATGCCAAC 
ACCCAGGCGATCCTGAAACAGGACGCCCGCCTGGCCAAGTACGCCGAGCAGGCCTGA