ViewGene
Locus Name:
GeneID:
Location:

GeneID:4316
TrivialName: PA14_49900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49900
PAO1 Ortholog Locus:PA1119
Sequence Length:507
Protein Length:168
Start: 4436710
Stop: 4437216
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04508.1|AE004542_4 (AE004542) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 167/168 (99%), Positives = 167/168 (99%)
Sequence:
GTGCTACCCCAGAGGCTCCACCCAAGTAGATTGCTCGCCCTCGCCCTGTTCAGCCTTGTGCTGGGCCTGGCC
GGTTGCCAGACCAAACCGCCGCAGACCGGCCTGAGCGCCGAGCAGATCGCCGTGCTCCAGGAGCAGGGCTTC
GAACTCCGCGACGAAGGCTGGGAGTTCGGCATGTCCAGCAAGGTGCTGTTCGGCAACAATCTCGACCGTCTC
AATCCCGACAGCCGCAACACCCTGACGAAGATCGCCCACGCCTTGCTCGCGGTAGACATCGACAAGGTCCGC
CTGGAAGGCCACACCGACAACTACGGCGACGAAGGCTACAACCAGAAGCTCTCCGAACGGCGCGCCGAATCG
GTAGCCGCGGTGTTCCGCGAAGCCGGCATGCCGGCGGCCAACATCGAGGTCCGCGGCCTGGGCATGAGCAAG
CCGGTGGCCGATAACAAGACCCGCGCCGGCCGCAGCGAGAACCGCCGCGTCGCCATCATCGTTCCCGCCGAG
TAA
Translation:
MLPQRLHPSRLLALALFSLVLGLAGCQTKPPQTGLSAEQIAVLQEQGFELRDEGWEFGMSSKVLFGNNLDRL
NPDSRNTLTKIAHALLAVDIDKVRLEGHTDNYGDEGYNQKLSERRAESVAAVFREAGMPAANIEVRGLGMSK
PVADNKTRAGRSENRRVAIIVPAE*
AnnotationID:4322GeneID:4316
AnnotatorUID: danlee
Modification Date/Time: 2004-07-12 14:02:09
Gene Name:
Confidence Code:3
GeneProduct:probable outer membrane protein precursor
Cell Localization:()
Synonyms:PA1119
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885, pfam00691
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
             CD-Length = 190 residues, only  76.3% aligned
             Score =  133 bits (334), Expect = 2e-32
pfam00691, OmpA, OmpA family. Score: 105, 3e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:15066




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25776




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4316
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6636
                           PA1119_tr
                           translation of PA1119
                           168
                           99.40
                           99.40
                           0
                           840.0
     

     
     
178954
                           gb|AAG04508.1|AE004542_4
                           (AE004542) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           168
                           98.80
                           99.40
                           0
                           837.0
     

     
     
178955
                           gb|AAN70242.1|AE016663_10
                           (AE016791) OmpA family protein [Pseudomonas putida KT2440]
                           174
                           50.00
                           64.36
                           8
                           402.0
     

     
     
178956
                           gb|AAM87279.1|AE013976_7
                           (AE013976) putative outer membrane protein [Yersinia pestis KIM]
                           176
                           47.15
                           64.20
                           16
                           390.0
     

     
     
178957
                           emb|CAC89304.1|
                           (AJ414142) putative lipoprotein [Yersinia pestis CO92]
                           176
                           47.15
                           64.20
                           16
                           390.0
     

     






      

          
GC ORFID: 47318How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1119Glimmer Score: 

          
Start: 517198Stop: 516692

          
Length: 507


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1119 translation of PA1119Homolog Bit Score 328.0

          
Other Homologs:  t_PA1119 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTACCCCAGAGGCTCCACCCAAGTAGATTGCTCGCCCTCGCCCTGTTCAGCCTTGTGCTGGGCCTGGCC 
GGTTGCCAGACCAAACCGCCGCAGACCGGCCTGAGCGCCGAGCAGATCGCCGTGCTCCAGGAGCAGGGCTTC 
GAACTCCGCGACGAAGGCTGGGAGTTCGGCATGTCCAGCAAGGTGCTGTTCGGCAACAATCTCGACCGTCTC 
AATCCCGACAGCCGCAACACCCTGACGAAGATCGCCCACGCCTTGCTCGCGGTAGACATCGACAAGGTCCGC 
CTGGAAGGCCACACCGACAACTACGGCGACGAAGGCTACAACCAGAAGCTCTCCGAACGGCGCGCCGAATCG 
GTAGCCGCGGTGTTCCGCGAAGCCGGCATGCCGGCGGCCAACATCGAGGTCCGCGGCCTGGGCATGAGCAAG 
CCGGTGGCCGATAACAAGACCCGCGCCGGCCGCAGCGAGAACCGCCGCGTCGCCATCATCGTTCCCGCCGAG 
TAA