ViewGene
Locus Name:
GeneID:
Location:

GeneID:4314
TrivialName: PA14_01410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01410
PAO1 Ortholog Locus:PA0116
Sequence Length:474
Protein Length:157
Start: 134433
Stop: 134906
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03506.1|AE004450_1 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGCGTTGGGAAGAACTGAGCGAACAACCCTGTTCGCTGGCGCGGGTGCTGGCGATCCTCGGCGATCGCTGG
ACCCTATTGGTATTGCGCGACTGCTTTCTCGGCGTGCGCCGTTTCGACGACTTCGAGCGCAGCCTCGGCGTG
ACCCGCCACGTCCTCGCCGACCGCCTCAAGCGCCTTGTCGAAGCGGAGATACTGGCCAAGGTGCCCTACCAG
GAACGGCCGCTGCGCGAGGAGTACCGGCTTACCGAGAAAGGGATGGAACTGTACCCGGCCATCCTTTCCCTG
GTGAACTGGGGCGACCGCCACCTCGCCGGCGTCGAGGGGCCGCCGCTGGAGCATGTGCACAAGCATTGCGGC
CAGCACATGCATGGCGTGCTGGTCTGTTCCGAATGCGGTGAGCCGCTGCACGCGCGGGACGTGACGGTACGC
GAGGGGCTGTTCTGGAAGGGGCGCCTGCTGCGGCGCGGCTGA
Translation:
MRWEELSEQPCSLARVLAILGDRWTLLVLRDCFLGVRRFDDFERSLGVTRHVLADRLKRLVEAEILAKVPYQ
ERPLREEYRLTEKGMELYPAILSLVNWGDRHLAGVEGPPLEHVHKHCGQHMHGVLVCSECGEPLHARDVTVR
EGLFWKGRLLRRG*
AnnotationID:4320GeneID:4314
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:40
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1733,pfam01638
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC47869.1| (AP005944) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 182

 Score =  181 bits (459), Expect = 1e-45
 Identities = 80/146 (54%), Positives = 110/146 (75%)






 
Structural Features:
COG1733, COG1733, Predicted transcriptional regulators [Transcription]
CD-Length = 120 residues, 100.0% aligned
Score =  112 bits (282), Expect = 2e-26
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

pfam01638, DUF24, Transcriptional regulator.
CD-Length = 91 residues,  95.6% aligned
Score = 82.2 bits (203), Expect = 2e-17
Identities = 32/87 (36%), Positives = 56/87 (64%), Gaps = 1/87 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25772




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33446




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4314_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4314
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6633
                           PA0116_tr
                           translation of PA0116
                           157
                           99.99
                           99.99
                           0
                           843.0
     

     
     
178923
                           gb|AAG03506.1|AE004450_1
                           (AE004450) hypothetical protein PA0116 [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           843.0
     

     
     
6634
                           PA2713_tr
                           translation of PA2713
                           160
                           60.62
                           73.12
                           4
                           508.0
     

     
     
178924
                           gb|AAG06101.1|AE004699_6
                           (AE004699) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           160
                           60.62
                           73.12
                           4
                           508.0
     

     
     
178926
                           dbj|BAC47869.1|
                           (AP005944) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           185
                           44.86
                           61.08
                           31
                           455.0
     

     






      

          
GC ORFID: 47316How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0116Glimmer Score: 

          
Start: 5935772Stop: 5936245

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0116 translation of PA0116Homolog Bit Score 329.0

          
Other Homologs:  t_PA2713 (ORF: BLASTX 201.0), t_PA0116 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTGGGAAGAACTGAGCGAACAACCCTGTTCGCTGGCGCGGGTGCTGGCGATCCTCGGCGATCGCTGG 
ACCCTATTGGTATTGCGCGACTGCTTTCTCGGCGTGCGCCGTTTCGACGACTTCGAGCGCAGCCTCGGCGTG 
ACCCGCCACGTCCTCGCCGACCGCCTCAAGCGCCTTGTCGAAGCGGAGATACTGGCCAAGGTGCCCTACCAG 
GAACGGCCGCTGCGCGAGGAGTACCGGCTTACCGAGAAAGGGATGGAACTGTACCCGGCCATCCTTTCCCTG 
GTGAACTGGGGCGACCGCCACCTCGCCGGCGTCGAGGGGCCGCCGCTGGAGCATGTGCACAAGCATTGCGGC 
CAGCACATGCATGGCGTGCTGGTCTGTTCCGAATGCGGTGAGCCGCTGCACGCGCGGGACGTGACGGTACGC 
GAGGGGCTGTTCTGGAAGGGGCGCCTGCTGCGGCGCGGCTGA