ViewGene
Locus Name:
GeneID:
Location:

GeneID:4313
TrivialName: PA14_12310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12310
PAO1 Ortholog Locus:PA3982
Sequence Length:483
Protein Length:160
Start: 1062556
Stop: 1062074
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07369.1|AE004816_5 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/160 (100%), Positives = 160/160 (100%)
Sequence:
ATGCCGCTTGAGCTCGACCTGCAGGTCGCCAGCGCCGCCCCGGACCTGCCCTCCGAAGCACAGTTCCGCGCC
TGGTGCGAACTGGCCCTGCGCCAGCGTCCGGAGTCGGAGCTGACCATCCGCCTGGTGGACGAGGCCGAAGGC
CTGGAACTGAACAGCACCTACCGGCACAAGGACTACGCGACCAACGTGCTGTCCTTCCCCGCCGATGTCCCG
GACGAGCTTCTCGATATCCCGCTGCTCGGCGACCTGGTGATCTGCGCCCCGGTGGTCGCCCGCGAAGCCCTG
GAACAGCGCAAGCCGTTGCAGGCCCACTGGGCCCACCTGGTGATCCACGGCTGCCTGCACCTGCTCGGCTAC
GACCACATCGACGACGCCGAAGCGGAAGAAATGGAAACACTGGAACGTGAATTGCTGGCGGAACTGGGTCAT
CCCGATCCGTACGCCTGCGACGACGAAGAGCCACCGAGCAAGGAAAAATGA
Translation:
MPLELDLQVASAAPDLPSEAQFRAWCELALRQRPESELTIRLVDEAEGLELNSTYRHKDYATNVLSFPADVP
DELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHLVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGH
PDPYACDDEEPPSKEK*
AnnotationID:4319GeneID:4313
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 17:05:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0319,pfam02130
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10193 COG0319, COG0319, Predicted metal-dependent hydrolase
[General function prediction only]
Length = 153
Score =  160 bits (406), Expect = 1e-40
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 2/151 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8627




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25770




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4313
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6632
                           PA3982_tr
                           translation of PA3982
                           160
                           99.99
                           99.99
                           0
                           843.0
     

     
     
178870
                           gb|AAG07369.1|AE004816_5
                           (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           160
                           99.99
                           99.99
                           0
                           843.0
     

     
     
178871
                           gb|AAN70357.1|AE016677_8
                           (AE016792) conserved hypothetical protein TIGR00043 [Pseudomonas putida KT2440]
                           161
                           74.53
                           81.98
                           5
                           606.0
     

     
     
178872
                           gb|AAO58235.1|
                           (AE016873) conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato str. DC3000]
                           169
                           71.59
                           79.28
                           12
                           610.0
     

     
     
178875
                           emb|CAC92861.1|
                           (AJ414153) conserved hypothetical protein [Yersinia pestis CO92]
                           163
                           56.44
                           70.55
                           9
                           452.0
     

     






      

          
GC ORFID: 47315How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3982Glimmer Score: 

          
Start: 3891382Stop: 3891864

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3982 translation of PA3982Homolog Bit Score 329.0

          
Other Homologs:  t_PA3982 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCTTGAGCTCGACCTGCAGGTCGCCAGCGCCGCCCCGGACCTGCCCTCCGAAGCACAGTTCCGCGCC 
TGGTGCGAACTGGCCCTGCGCCAGCGTCCGGAGTCGGAGCTGACCATCCGCCTGGTGGACGAGGCCGAAGGC 
CTGGAACTGAACAGCACCTACCGGCACAAGGACTACGCGACCAACGTGCTGTCCTTCCCCGCCGATGTCCCG 
GACGAGCTTCTCGATATCCCGCTGCTCGGCGACCTGGTGATCTGCGCCCCGGTGGTCGCCCGCGAAGCCCTG 
GAACAGCGCAAGCCGTTGCAGGCCCACTGGGCCCACCTGGTGATCCACGGCTGCCTGCACCTGCTCGGCTAC 
GACCACATCGACGACGCCGAAGCGGAAGAAATGGAAACACTGGAACGTGAATTGCTGGCGGAACTGGGTCAT 
CCCGATCCGTACGCCTGCGACGACGAAGAGCCACCGAGCAAGGAAAAATGA