ViewGene
Locus Name:
GeneID:
Location:

GeneID:4312
TrivialName: PA14_59670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59670
PAO1 Ortholog Locus:
Sequence Length:501
Protein Length:166
Start: 5309339
Stop: 5309839
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84176.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 166/166 (100%), Positives = 166/166 (100%)
Sequence:
ATGAAGAAGTTCCTTGCCACGCTGGCATTTTGCACGGCGTTCGCGACTCAAGCCTGGGCCGCCGGGCTGATC
GTTGTCGAAGACCTCGGCGGCGCCTCGGCGCTCCCCTACTACCAGGGCCTGGATCCGCAGCCATCCGCTTCC
GCACCAGGACCTGGCGACCTGGGCGTCCGTGGCTCAGGTGCGTTTCCAGTTCGCTCCGCCCGCCTATCGCCA
GGACGGGTCCAGGGGCGCGCCATCAACGCTCCAGGCCTGCAACTGCTGTTCCTGGTCGGCGACGACACGCTG
TCTCGAACCTGGCTGAAAGAGCGAGGCGACGAGCTTCGAGACCTCCAAGCCGTGGGCCTGGCAGTGAACGTG
GCCAGCGAAGCGCGCCTGACGGAAATCCGGGCCTGGGGGAAAGGACTTCAGATATTGCCGGCGCCGGCGGAC
GACCTGGTCGACCGGCTAGGGCTGCAGCATTACCCCGCCCTCATCACATCCACCGCCATCCAGCAGTAG
Translation:
MKKFLATLAFCTAFATQAWAAGLIVVEDLGGASALPYYQGLDPQPSASAPGPGDLGVRGSGAFPVRSARLSP
GRVQGRAINAPGLQLLFLVGDDTLSRTWLKERGDELRDLQAVGLAVNVASEARLTEIRAWGKGLQILPAPAD
DLVDRLGLQHYPALITSTAIQQ*
AnnotationID:4318GeneID:4312
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 20:08:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25768




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4312
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
178864
                           gb|AAP84176.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           166
                           99.99
                           99.99
                           0
                           845.0
     

     
     
178865
                           gb|AAN62291.1|AF440524_78
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           179
                           46.92
                           56.42
                           17
                           369.0
     

     
     
178866
                           gb|AAN62160.1|AF440523_67
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           183
                           46.44
                           56.83
                           18
                           352.0
     

     
     
178867
                           gb|AAM37110.1|
                           (AE011862) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           195
                           46.15
                           54.87
                           34
                           348.0
     

     
     
178868
                           emb|CAE92923.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           186
                           44.62
                           54.83
                           24
                           339.0
     

     






      

          
GC ORFID: 47314How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL049Glimmer Score: 

          
Start: 4573018Stop: 4573518

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL049 166 Homolog: XAC2257 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37110) translation of RL049Homolog Bit Score 330.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1631 (ORF: BLASTX 160.0), t_RL049 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAGTTCCTTGCCACGCTGGCATTTTGCACGGCGTTCGCGACTCAAGCCTGGGCCGCCGGGCTGATC 
GTTGTCGAAGACCTCGGCGGCGCCTCGGCGCTCCCCTACTACCAGGGCCTGGATCCGCAGCCATCCGCTTCC 
GCACCAGGACCTGGCGACCTGGGCGTCCGTGGCTCAGGTGCGTTTCCAGTTCGCTCCGCCCGCCTATCGCCA 
GGACGGGTCCAGGGGCGCGCCATCAACGCTCCAGGCCTGCAACTGCTGTTCCTGGTCGGCGACGACACGCTG 
TCTCGAACCTGGCTGAAAGAGCGAGGCGACGAGCTTCGAGACCTCCAAGCCGTGGGCCTGGCAGTGAACGTG 
GCCAGCGAAGCGCGCCTGACGGAAATCCGGGCCTGGGGGAAAGGACTTCAGATATTGCCGGCGCCGGCGGAC 
GACCTGGTCGACCGGCTAGGGCTGCAGCATTACCCCGCCCTCATCACATCCACCGCCATCCAGCAGTAG