ViewGene
Locus Name:
GeneID:
Location:

GeneID:4311
TrivialName: PA14_01030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01030
PAO1 Ortholog Locus:PA0085
Sequence Length:489
Protein Length:162
Start: 101003
Stop: 101491
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03475.1|AE004447_8 (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGGCTGTTGATATGTTCATCAAGATCGGCGACGTCAAGGGTGAGTCCAAGGACAAGACTCACGCCGAGGAA
ATCGACGTGCTGGCATGGAGCTGGGGCATGTCCCAGTCCGGGTCGATGCACATGGGCGGTGGCGGCGGCGCC
GGCAAGGTCAACGTGCAGGACCTGTCGTTCACCAAGTACATCGACAAGTCCACGCCCAACCTGATGATGGCC
TGCTCCAGCGGCAAGCACTATCCGCAGGCGAAGCTGACCATCCGCAAGGCCGGCGGCGAGAACCAGGTCGAG
TACCTGATCATCACCCTGAAGGAAGTCCTGGTGTCCTCGGTGAGCACCGGCGGCAGCGGTGGCGAGGATCGC
CTGACCGAGAACGTGACCCTGAACTTCGCCCAGGTCCAGGTCGACTACCAGCCGCAGAAGGCGGATGGCGCG
AAGGACGGCGGTCCGGTCAAGTACGGCTGGAACATCCGCCAGAACGTGCAGGCCTGA
Translation:
MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMA
CSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGA
KDGGPVKYGWNIRQNVQA*
AnnotationID:4317GeneID:4311
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0085
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19236.1| (AE008707) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 161

 Score =  142 bits (359), Expect = 6e-34
 Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

>emb|CAC48210.1| (AJ320483) SciM protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 161

 Score =  142 bits (359), Expect = 6e-34
 Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8623




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25766




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33442




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4311_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4311
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6631
                           PA0085_tr
                           translation of PA0085
                           162
                           99.99
                           99.99
                           0
                           845.0
     

     
     
178851
                           gb|AAG03475.1|AE004447_8
                           (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           162
                           99.99
                           99.99
                           0
                           845.0
     

     
     
178852
                           dbj|BAC48857.1|
                           (AP005948) bll3592 [Bradyrhizobium japonicum USDA 110]
                           163
                           56.44
                           74.23
                           3
                           480.0
     

     
     
178855
                           gb|AAM38980.1|
                           (AE012065) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           168
                           46.42
                           63.09
                           7
                           358.0
     

     
     
178859
                           emb|CAD08734.1|
                           (AL627266) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           163
                           44.78
                           62.57
                           3
                           353.0
     

     






      

          
GC ORFID: 47313How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0085Glimmer Score: 

          
Start: 5902342Stop: 5902830

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0085 translation of PA0085Homolog Bit Score 330.0

          
Other Homologs:  t_PA0085 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGTTGATATGTTCATCAAGATCGGCGACGTCAAGGGTGAGTCCAAGGACAAGACTCACGCCGAGGAA 
ATCGACGTGCTGGCATGGAGCTGGGGCATGTCCCAGTCCGGGTCGATGCACATGGGCGGTGGCGGCGGCGCC 
GGCAAGGTCAACGTGCAGGACCTGTCGTTCACCAAGTACATCGACAAGTCCACGCCCAACCTGATGATGGCC 
TGCTCCAGCGGCAAGCACTATCCGCAGGCGAAGCTGACCATCCGCAAGGCCGGCGGCGAGAACCAGGTCGAG 
TACCTGATCATCACCCTGAAGGAAGTCCTGGTGTCCTCGGTGAGCACCGGCGGCAGCGGTGGCGAGGATCGC 
CTGACCGAGAACGTGACCCTGAACTTCGCCCAGGTCCAGGTCGACTACCAGCCGCAGAAGGCGGATGGCGCG 
AAGGACGGCGGTCCGGTCAAGTACGGCTGGAACATCCGCCAGAACGTGCAGGCCTGA