ViewGene
Locus Name:
GeneID:
Location:

GeneID:4310
TrivialName: PA14_01060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01060
PAO1 Ortholog Locus:PA0087
Sequence Length:510
Protein Length:169
Start: 102506
Stop: 103015
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03477.1|AE004447_10 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/169 (99%), Positives = 169/169 (100%)
Sequence:
ATGGCTGAACTGACCCTCCAGGAGCGCCTGCAGCCGTCGCTGCTCGACCGCCTCACCGACGACGAGCCGGGC
AACCTCAAGGAAGCCGCGGAGCGCCGGGTGCTGACCCTGAGCCAGCTGAAGGCCTCGGTGCTGCGCGACCTG
GCGTGGCTGTTCAACACCACTTCGCTGTTCGACCACGGCCCCGCCGCACGGATGCCGGCCGGCAACTCGGTG
CTCAACTACGGGCTGCCGGCGCTGGCCGGGCACACCGCGTCGAGCGTCGACGTGCATGCCATCGAGGCGCTG
CTCACCGAGACCATCGCCACCTTCGAGCCGCGCATCATCCGTTCTTCGTTGCGGGTGCGCGCGCAACTGCTG
CCCGGCGAGATGGACCACAACGCCCTGAGCTTCGAGATCGAGGGCGATCTCTGGGCCGAACCGGCGCCGCTG
CGCCTGCTGCTGACCACCAACCTGGACCTGGAGACCGGTCACGTGCGCGTCGCCCAGGGCGAGCGGAGGCGT
ACATGA
Translation:
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLSQLKASVLRDLAWLFNTTSLFDHGPAARMPAGNSV
LNYGLPALAGHTASSVDVHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPL
RLLLTTNLDLETGHVRVAQGERRRT*
AnnotationID:4316GeneID:4310
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0087
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8621




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25764




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33436




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4310_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4310
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6630
                           PA0087_tr
                           translation of PA0087
                           169
                           99.40
                           99.99
                           0
                           845.0
     

     
     
178847
                           gb|AAG03477.1|AE004447_10
                           (AE004447) hypothetical protein PA0087 [Pseudomonas aeruginosa PAO1]
                           169
                           99.40
                           99.99
                           0
                           845.0
     

     
     
178848
                           gb|AAM38978.1|
                           (AE012064) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           170
                           45.88
                           61.17
                           4
                           374.0
     

     
     
178849
                           emb|CAE31303.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           178
                           42.69
                           56.17
                           15
                           321.0
     

     
     
178850
                           emb|CAE40127.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           178
                           42.69
                           56.17
                           15
                           321.0
     

     






      

          
GC ORFID: 47312How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0087Glimmer Score: 

          
Start: 5903845Stop: 5904354

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0087 translation of PA0087Homolog Bit Score 330.0

          
Other Homologs:  t_PA0087 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAACTGACCCTCCAGGAGCGCCTGCAGCCGTCGCTGCTCGACCGCCTCACCGACGACGAGCCGGGC 
AACCTCAAGGAAGCCGCGGAGCGCCGGGTGCTGACCCTGAGCCAGCTGAAGGCCTCGGTGCTGCGCGACCTG 
GCGTGGCTGTTCAACACCACTTCGCTGTTCGACCACGGCCCCGCCGCACGGATGCCGGCCGGCAACTCGGTG 
CTCAACTACGGGCTGCCGGCGCTGGCCGGGCACACCGCGTCGAGCGTCGACGTGCATGCCATCGAGGCGCTG 
CTCACCGAGACCATCGCCACCTTCGAGCCGCGCATCATCCGTTCTTCGTTGCGGGTGCGCGCGCAACTGCTG 
CCCGGCGAGATGGACCACAACGCCCTGAGCTTCGAGATCGAGGGCGATCTCTGGGCCGAACCGGCGCCGCTG 
CGCCTGCTGCTGACCACCAACCTGGACCTGGAGACCGGTCACGTGCGCGTCGCCCAGGGCGAGCGGAGGCGT 
ACATGA