ViewGene
Locus Name:
GeneID:
Location:

GeneID:4309
TrivialName: PA14_00590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00590
PAO1 Ortholog Locus:PA0047
Sequence Length:510
Protein Length:169
Start: 60241
Stop: 60750
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03437.1|AE004444_6 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
GTGAAGGCGACCTACAGCATGCTCTCGCAGGTCACCTTCCCGCTGGCCGAGGCCGGCTACTACGTGGTGCCG
GTGGCGCTGGCCGACGAGACCTTCCGCCAGAACGGCCTGACCAGCGCCGGCGACGTGCACCAGGTGTCCCCG
GCCAAGCTGCGCGAGATCTATGGCGCCGACGCGGCGCTGTACGTCACGGTGAGCGACTACGGCACGCGCTAC
ATGGTGATCAGCAGCGCGACCATCGTCACCGCCAGCGCCAAGCTGGTCGACCTGCGATCCGGCACCACCCTG
TGGACCGGCTCGGCGACCGCCTCCAGCGAGGAAGGCAACGGCGGCAACAACGGCGGCCTGGTGGGCATGCTG
ATCACCGCGGCGGTCAAGCAGATCATCAACAGTTCGGTGGAGGACGCCGGTTATCCGATCGCCGGGATGACC
AGTGCGCGCTTGCTCTCAGCCGGCCAGCCGGGCGGACTGTTGTACGGCCCGCGCTCGCCGAGGTACGGCAGC
GACTGA
Translation:
MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRY
MVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMT
SARLLSAGQPGGLLYGPRSPRYGSD*
AnnotationID:4315GeneID:4309
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:17
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0047
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54777.1| (AE016860) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 220

 Score =  249 bits (637), Expect = 4e-66
 Identities = 124/169 (73%), Positives = 145/169 (85%), Gaps = 1/169 (0%)

>emb|CAD17826.1| (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
          Length = 223

 Score =  238 bits (608), Expect = 9e-63
 Identities = 120/172 (69%), Positives = 148/172 (86%), Gaps = 4/172 (2%)

>gb|AAM85085.1|AE013754_7 (AE013754) putative lipoprotein [Yersinia pestis KIM]
          Length = 218

 Score =  219 bits (558), Expect = 5e-57
 Identities = 106/167 (63%), Positives = 139/167 (83%), Gaps = 2/167 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15064




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25762




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33403




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4309_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4309
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6629
                           PA0047_tr
                           translation of PA0047
                           169
                           99.99
                           99.99
                           0
                           846.0
     

     
     
178804
                           gb|AAG03437.1|AE004444_6
                           (AE004444) hypothetical protein PA0047 [Pseudomonas aeruginosa PAO1]
                           169
                           99.40
                           99.99
                           0
                           843.0
     

     
     
178805
                           gb|AAO54777.1|
                           (AE016860) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           221
                           56.56
                           65.61
                           53
                           642.0
     

     
     
178806
                           emb|CAD17826.1|
                           (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
                           224
                           54.01
                           66.07
                           56
                           617.0
     

     
     
178808
                           emb|CAC92214.1|
                           (AJ414154) putative lipoprotein [Yersinia pestis CO92]
                           220
                           48.63
                           63.63
                           53
                           565.0
     

     






      

          
GC ORFID: 47311How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0047Glimmer Score: 

          
Start: 5861578Stop: 5862087

          
Length: 510


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0047 translation of PA0047Homolog Bit Score 330.0

          
Other Homologs:  t_PA0047 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGGCGACCTACAGCATGCTCTCGCAGGTCACCTTCCCGCTGGCCGAGGCCGGCTACTACGTGGTGCCG 
GTGGCGCTGGCCGACGAGACCTTCCGCCAGAACGGCCTGACCAGCGCCGGCGACGTGCACCAGGTGTCCCCG 
GCCAAGCTGCGCGAGATCTATGGCGCCGACGCGGCGCTGTACGTCACGGTGAGCGACTACGGCACGCGCTAC 
ATGGTGATCAGCAGCGCGACCATCGTCACCGCCAGCGCCAAGCTGGTCGACCTGCGATCCGGCACCACCCTG 
TGGACCGGCTCGGCGACCGCCTCCAGCGAGGAAGGCAACGGCGGCAACAACGGCGGCCTGGTGGGCATGCTG 
ATCACCGCGGCGGTCAAGCAGATCATCAACAGTTCGGTGGAGGACGCCGGTTATCCGATCGCCGGGATGACC 
AGTGCGCGCTTGCTCTCAGCCGGCCAGCCGGGCGGACTGTTGTACGGCCCGCGCTCGCCGAGGTACGGCAGC 
GACTGA