ViewGene
Locus Name:
GeneID:
Location:

GeneID:4308
TrivialName: PA14_71230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71230
PAO1 Ortholog Locus:PA5395
Sequence Length:471
Protein Length:156
Start: 6346455
Stop: 6346925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08780.1|AE004952_2 (AE004952) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/156 (99%), Positives = 155/156 (99%)
Sequence:
ATGAGCGACGTCCGTCCCCCGCTTCCCCCCTTCACCGCCGAAACCGCCGCGCAGAAGGTCCGCGCCGCCGAG
GACGGCTGGAACAGCCGCGACCCGCAGCGCGTCTCGCTGGCCTACAGTCCCGACAGCGTCTGGCGCAATCGC
TCGACCTTCGTCCGCGGCCGCGAGCGGATCGTCGAATTCCTCAGCGGCAAGTGGCAGCGCGAGCAGGAGTAC
CGGCTGATCAAGGAGCTCTGGGCGTTTACCGGCAACCGCATCGCCGTGCGCTTCGCCTATGAATGGCACGAC
GACTCGGGCAACTGGTTCCGCTCCTACGGCAACGAGAACTGGGCGTTCGACGAGCAGGGATTGATGTACGAA
CGTCACGCCAGCATCAACGACCTGCCGATCCGCGAGGACCAGCGGCTGTTCCGCTGGCCGCTGGGGCGCCGG
CCGGACAACCATCCGTCGCTCGGCGAACTCGGCCTCTGA
Translation:
MSDVRPPLPPFTAETAAQKVRAAEDGWNSRDPQRVSLAYSPDSVWRNRSTFVRGRERIVEFLSGKWQREQEY
RLIKELWAFTGNRIAVRFAYEWHDDSGNWFRSYGNENWAFDEQGLMYERHASINDLPIREDQRLFRWPLGRR
PDNHPSLGELGL*
AnnotationID:4314GeneID:4308
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5395
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25760




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34672




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4308_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4308
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6628
                           PA5395_tr
                           translation of PA5395
                           156
                           99.35
                           99.35
                           0
                           847.0
     

     
     
178784
                           gb|AAG08780.1|AE004952_2
                           (AE004952) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           156
                           99.35
                           99.35
                           0
                           847.0
     

     
     
178786
                           dbj|BAB50397.1|
                           (AP003002) hypothetical protein [Mesorhizobium loti]
                           156
                           73.71
                           82.05
                           0
                           633.0
     

     
     
178787
                           gb|AAO55449.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           71.33
                           79.61
                           1
                           619.0
     

     
     
178785
                           emb|CAE14798.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           159
                           69.81
                           80.50
                           3
                           636.0
     

     






      

          
GC ORFID: 47310How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5395Glimmer Score: 

          
Start: 5610144Stop: 5610614

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5395 translation of PA5395Homolog Bit Score 330.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7888 (ORF: BLASTX 241.0), t_PA5395 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACGTCCGTCCCCCGCTTCCCCCCTTCACCGCCGAAACCGCCGCGCAGAAGGTCCGCGCCGCCGAG 
GACGGCTGGAACAGCCGCGACCCGCAGCGCGTCTCGCTGGCCTACAGTCCCGACAGCGTCTGGCGCAATCGC 
TCGACCTTCGTCCGCGGCCGCGAGCGGATCGTCGAATTCCTCAGCGGCAAGTGGCAGCGCGAGCAGGAGTAC 
CGGCTGATCAAGGAGCTCTGGGCGTTTACCGGCAACCGCATCGCCGTGCGCTTCGCCTATGAATGGCACGAC 
GACTCGGGCAACTGGTTCCGCTCCTACGGCAACGAGAACTGGGCGTTCGACGAGCAGGGATTGATGTACGAA 
CGTCACGCCAGCATCAACGACCTGCCGATCCGCGAGGACCAGCGGCTGTTCCGCTGGCCGCTGGGGCGCCGG 
CCGGACAACCATCCGTCGCTCGGCGAACTCGGCCTCTGA