ViewGene
Locus Name:
GeneID:
Location:

GeneID:4307
TrivialName: PA14_61450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61450
PAO1 Ortholog Locus:PA4644
Sequence Length:474
Protein Length:157
Start: 5484060
Stop: 5483587
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08031.1|AE004878_9 (AE004878) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGGCCGGACCGCGCTACCTCGACCAGCAATTGTTCGCCGAACTGGCGAGCGGGGCGGGTAACGCGCCGCGT
GGTCGCCAGCATCACAACTTCCACCGCATGGAGGAGCCCTGCCACCGCATGGCAGTGGGCCTCCAGCCGAAT
ACCTACATCCCGCCGCACCGGCACCTGGATGCGGGCAAGGCCGAGGCGCTGATCGTGCTCAAGGGCCGTCTC
GGCCTGCTGGTCTTCGCCGAGGACGGGGAACTCCTCGACAAGCGCGAGTTGAGCGCCGCTGGGGACTGCCCC
GGTGTCGACCTGCCGCCCGGGGTGTTCCATGCCCTGGTGGTGCTGGAGCCGGACAGCATCCTGTTCGAATGC
AAGGCCGGGCCTTACCGCCCGCTCGGCGAAGGCGAGTTCGCCAGTTGGGCGCCTGCCGAAGGCAGCGCCGAT
GCGCCGGCCTACCGGGACTGGATGCGCGCCCAGTTCGCCTGA
Translation:
MAGPRYLDQQLFAELASGAGNAPRGRQHHNFHRMEEPCHRMAVGLQPNTYIPPHRHLDAGKAEALIVLKGRL
GLLVFAEDGELLDKRELSAAGDCPGVDLPPGVFHALVVLEPDSILFECKAGPYRPLGEGEFASWAPAEGSAD
APAYRDWMRAQFA*
AnnotationID:4313GeneID:4307
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 18:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4644
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25758




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4307
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6627
                           PA4644_tr
                           translation of PA4644
                           157
                           99.99
                           99.99
                           0
                           846.0
     

     
     
178779
                           gb|AAG08031.1|AE004878_9
                           (AE004878) hypothetical protein PA4644 [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           846.0
     

     
     
178780
                           gb|AAN66373.1|AE016265_7
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           157
                           71.33
                           76.43
                           0
                           603.0
     

     
     
178783
                           gb|AAQ61954.1|
                           (AE016925) hypothetical protein CV4294 [Chromobacterium violaceum ATCC 12472]
                           163
                           36.80
                           53.98
                           11
                           267.0
     

     
     
178781
                           gb|AAN47292.1|AE011200_11
                           (AE011200) conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601]
                           178
                           35.39
                           48.31
                           22
                           305.0
     

     






      

          
GC ORFID: 47309How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4644Glimmer Score: 

          
Start: 4747740Stop: 4747267

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4644 translation of PA4644Homolog Bit Score 330.0

          
Other Homologs:  t_PA4644 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGACCGCGCTACCTCGACCAGCAATTGTTCGCCGAACTGGCGAGCGGGGCGGGTAACGCGCCGCGT 
GGTCGCCAGCATCACAACTTCCACCGCATGGAGGAGCCCTGCCACCGCATGGCAGTGGGCCTCCAGCCGAAT 
ACCTACATCCCGCCGCACCGGCACCTGGATGCGGGCAAGGCCGAGGCGCTGATCGTGCTCAAGGGCCGTCTC 
GGCCTGCTGGTCTTCGCCGAGGACGGGGAACTCCTCGACAAGCGCGAGTTGAGCGCCGCTGGGGACTGCCCC 
GGTGTCGACCTGCCGCCCGGGGTGTTCCATGCCCTGGTGGTGCTGGAGCCGGACAGCATCCTGTTCGAATGC 
AAGGCCGGGCCTTACCGCCCGCTCGGCGAAGGCGAGTTCGCCAGTTGGGCGCCTGCCGAAGGCAGCGCCGAT 
GCGCCGGCCTACCGGGACTGGATGCGCGCCCAGTTCGCCTGA