ViewGene
Locus Name:
GeneID:
Location:

GeneID:4305
TrivialName: PA14_14130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14130
PAO1 Ortholog Locus:PA3856
Sequence Length:483
Protein Length:160
Start: 1209585
Stop: 1210067
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07243.1|AE004802_12 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/160 (98%), Positives = 159/160 (99%)
Sequence:
ATGGCCCACCCCAACGCCGAACTGATCGAGCGCTTCTACCAGGCCTTCCAGCGCCTCGACGGCGAGGCCATG
GCGGCCTGCTACGCCCCCCAGGCGACCTTCCACGACCCGGCCTTCGGCGAACTGCGCGGGCGCGAGGTGGGC
GACATGTGGCGCCTGCTGACCAGCCGGGCGCGGGACTTCCGCCTGGACTACGCGAACGTCCGCGCCGACCAG
AACGAGGGGCGTGCGCAATGGGTGGCCCACTACCTGTTCACCCAGACCGGGCGCAGGGTGGAGAATCGCATC
GAGGCCCGTTTCCGCTTCGCCGACGGTTTGATCGTCGAGCATCGCGACCAGTTCGACCTGTGGCGCTGGAGC
CGCCAGGCGCTTGGCGTCAAGGGCCTGCTGCTGGGCTGGGCGCCGCCGGTGCAGCGGGCGATCCGCGGGCAG
GCGCGCAAGGGCCTGGCCGCCTACCAGGCTGCCCATCCGGCGGCCGGCTGA
Translation:
MAHPNAELIERFYQAFQRLDGEAMAACYAPQATFHDPAFGELRGREVGDMWRLLTSRARDFRLDYANVRADQ
NEGRAQWVAHYLFTQTGRRVENRIEARFRFADGLIVEHRDQFDLWRWSRQALGVKGLLLGWAPPVQRAIRGQ
ARKGLAAYQAAHPAAG*
AnnotationID:4311GeneID:4305
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3856
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8611




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25754




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31708




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4305_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4305
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6625
                           PA3856_tr
                           translation of PA3856
                           160
                           98.75
                           99.37
                           0
                           846.0
     

     
     
178771
                           gb|AAG07243.1|AE004802_12
                           (AE004802) hypothetical protein PA3856 [Pseudomonas aeruginosa PAO1]
                           160
                           98.75
                           99.37
                           0
                           846.0
     

     
     
178772
                           gb|AAN66596.1|AE016287_7
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           58.75
                           72.50
                           2
                           503.0
     

     
     
178773
                           gb|AAO54786.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           54.54
                           64.20
                           18
                           502.0
     

     
     
178774
                           gb|AAN50858.1|AE011521_4
                           (AE011521) conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601]
                           167
                           37.72
                           55.08
                           10
                           335.0
     

     






      

          
GC ORFID: 47307How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3856Glimmer Score: 

          
Start: 3744353Stop: 3743871

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3856 translation of PA3856Homolog Bit Score 330.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4394 (ORF: BLASTX 202.0), t_PA3856 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCACCCCAACGCCGAACTGATCGAGCGCTTCTACCAGGCCTTCCAGCGCCTCGACGGCGAGGCCATG 
GCGGCCTGCTACGCCCCCCAGGCGACCTTCCACGACCCGGCCTTCGGCGAACTGCGCGGGCGCGAGGTGGGC 
GACATGTGGCGCCTGCTGACCAGCCGGGCGCGGGACTTCCGCCTGGACTACGCGAACGTCCGCGCCGACCAG 
AACGAGGGGCGTGCGCAATGGGTGGCCCACTACCTGTTCACCCAGACCGGGCGCAGGGTGGAGAATCGCATC 
GAGGCCCGTTTCCGCTTCGCCGACGGTTTGATCGTCGAGCATCGCGACCAGTTCGACCTGTGGCGCTGGAGC 
CGCCAGGCGCTTGGCGTCAAGGGCCTGCTGCTGGGCTGGGCGCCGCCGGTGCAGCGGGCGATCCGCGGGCAG 
GCGCGCAAGGGCCTGGCCGCCTACCAGGCTGCCCATCCGGCGGCCGGCTGA