ViewGene
Locus Name:
GeneID:
Location:

GeneID:4304
TrivialName: PA14_24040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24040
PAO1 Ortholog Locus:PA3100
Sequence Length:519
Protein Length:172
Start: 2088051
Stop: 2088569
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06488.1|AE004734_6 (AE004734) General secretion pathway outer membrane protein H precursor [Pseudomonas aeruginosa PAO1]
Identities = 171/172 (99%), Positives = 172/172 (100%)
Sequence:
ATGCAGGCTTCGCGCGGCTTCACCCTCATCGAGCTGATGGTGGTGATGGTCATCATCAGCGTGCTGATCGGC
CTGGCGGTGCTCAGCACCGGCTTCGCCAGCACCTCGCGGGAGCTGGACAGCGAGGCCGAGCGGCTCGCCGGG
CTGATCGGCGTGCTGACCGACGAGGCCGTGCTGGACAACCGCGAGTACGGCCTGCGCCTGGAGCGCGATGCC
TATCAGGTGCTGCGCTACGACGAAGCGAAGGCGCGCTGGTTGCCGGTGGCGCGCGACAGCCACCGCCTGCCG
GAGTGGGCGGAGCTGACCTTCGAGCTGGACGGCCAGCCGCTGGTGCTGGCCGGCAGCAAGGGCGAGAAGGAG
CAGAAGAAAGGCACCGACCAGCCGCAATTGCTGATCCTTTCCAGTGGCGAACTCAGCCCGTTCCGCCTGCGC
CTGGCCGAGCGCGGACCCGAGGGGCGGGCGTTGTCGCTGAGCAGCGACGGTTTCCGCCTGCCACGGGTCGAG
GTGGCGCGGCGATGA
Translation:
MQASRGFTLIELMVVMVIISVLIGLAVLSTGFASTSRELDSEAERLAGLIGVLTDEAVLDNREYGLRLERDA
YQVLRYDEAKARWLPVARDSHRLPEWAELTFELDGQPLVLAGSKGEKEQKKGTDQPQLLILSSGELSPFRLR
LAERGPEGRALSLSSDGFRLPRVEVARR*
AnnotationID:4310GeneID:4304
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:11
Gene Name:xcpU
Confidence Code:1
GeneProduct:general secretion pathway outer membrane protein H precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2165
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2165, PulG, Type II secretory pathway, pseudopilin PulG 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 149 residues,  98.0% aligned
Score = 52.0 bits (123), Expect = 4e-08
Identities = 37/164 (22%), Positives = 53/164 (32%), Gaps = 18/164 (10%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25752




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32424




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4304_cdd.html


    		




 
URL:

















    ReferenceID:33459




  
Author/Investigator(s):
        Lu HM, Motley ST, Lory S.





  
Title:
        Interactions of the components of the general secretion pathway: role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion.




  
PubMed:
        9282737


MedLine:
        




    
Source:
Mol Microbiol. 1997 Jul;25(2):247-59.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9282737

















    ReferenceID:33460




  
Author/Investigator(s):
        Nunn DN, Lory S.





  
Title:
        Cleavage, methylation, and localization of the Pseudomonas aeruginosa export proteins XcpT, -U, -V, and -W.




  
PubMed:
        8331069


MedLine:
        




    
Source:
J Bacteriol. 1993 Jul;175(14):4375-82.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8331069









           
Homologs By Global Alignment 

           

       



     
Gene ID:4304
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6624
                           PA3100_tr
                           translation of PA3100
                           172
                           99.41
                           99.99
                           0
                           845.0
     

     
     
178767
                           gb|AAG06488.1|AE004734_6
                           (AE004734) General secretion pathway outer membrane protein H precursor [Pseudomonas aeruginosa PAO1]
                           172
                           99.41
                           99.99
                           0
                           845.0
     

     
     
178768
                           emb|CAA44536.1|
                           (X62666) secretion protein XcpU [Pseudomonas aeruginosa]
                           172
                           99.41
                           99.99
                           0
                           845.0
     

     
     
178769
                           gb|AAA25947.1|
                           (M80792) PilD-dependent protein [Pseudomonas aeruginosa]
                           172
                           98.83
                           99.41
                           0
                           840.0
     

     
     
178770
                           gb|AAC83359.1|
                           (AF092918) outer membrane secretion protein U [Pseudomonas alcaligenes]
                           177
                           51.97
                           68.92
                           8
                           421.0
     

     






      

          
GC ORFID: 47306How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3100Glimmer Score: 

          
Start: 2865880Stop: 2865362

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3100 translation of PA3100Homolog Bit Score 330.0

          
Other Homologs:  t_PA3100 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGCTTCGCGCGGCTTCACCCTCATCGAGCTGATGGTGGTGATGGTCATCATCAGCGTGCTGATCGGC 
CTGGCGGTGCTCAGCACCGGCTTCGCCAGCACCTCGCGGGAGCTGGACAGCGAGGCCGAGCGGCTCGCCGGG 
CTGATCGGCGTGCTGACCGACGAGGCCGTGCTGGACAACCGCGAGTACGGCCTGCGCCTGGAGCGCGATGCC 
TATCAGGTGCTGCGCTACGACGAAGCGAAGGCGCGCTGGTTGCCGGTGGCGCGCGACAGCCACCGCCTGCCG 
GAGTGGGCGGAGCTGACCTTCGAGCTGGACGGCCAGCCGCTGGTGCTGGCCGGCAGCAAGGGCGAGAAGGAG 
CAGAAGAAAGGCACCGACCAGCCGCAATTGCTGATCCTTTCCAGTGGCGAACTCAGCCCGTTCCGCCTGCGC 
CTGGCCGAGCGCGGACCCGAGGGGCGGGCGTTGTCGCTGAGCAGCGACGGTTTCCGCCTGCCACGGGTCGAG 
GTGGCGCGGCGATGA