ViewGene
Locus Name:
GeneID:
Location:

GeneID:4303
TrivialName: PA14_29290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29290
PAO1 Ortholog Locus:PA2693
Sequence Length:501
Protein Length:166
Start: 2534842
Stop: 2534342
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06081.1|AE004697_6 (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 166/166 (100%), Positives = 166/166 (100%)
Sequence:
ATGGAACCTGGCAGCTACCAACTGACCATGAGCGTGCTCATGACCCCCGACAAGGCGAACTTCTCCGGCAAC
GTCCACGGCGGCGCGCTGCTCAAGCTCCTCGACGAAGTGGCCTTCGCCTGCGCCAAGCGCTACGCCGGACGC
TACGTGGTGACCCTGTCGGTGGATCAGGTGATCTTCCGCGAGCCGATCCATGTCGGCGAACTGGTGACCTTC
CTCGCCTCGGTGAACTACACCGGGCGCACTTCGATGGAGGTCGGGGTGAAGGTGATGACCGAGAACATCCAC
GAGCGCACCGTGCGCCATACCAACAGTTGCTTCTTCACCATGGTGGCGATGGACGACCAGCGCCGGCCGGTG
GCGGTGCGTCCACTGGAACCGGAGACCGCGATCGAGAAACGCCGCTACGCCCAGGCCCTGGCCCGGCGCGAG
CAGCGCAAGCTGATGGAACTGCGCTACCAGGAGATCCGCGAACAGGTGGATCACGCGATGCCGGCCTGA
Translation:
MEPGSYQLTMSVLMTPDKANFSGNVHGGALLKLLDEVAFACAKRYAGRYVVTLSVDQVIFREPIHVGELVTF
LASVNYTGRTSMEVGVKVMTENIHERTVRHTNSCFFTMVAMDDQRRPVAVRPLEPETAIEKRRYAQALARRE
QRKLMELRYQEIREQVDHAMPA*
AnnotationID:4309GeneID:4303
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 19:07:09
Gene Name:
Confidence Code:3
GeneProduct:putative long-chain acyl-CoA thioester hydrolase
Cell Localization:()
Synonyms:PA2693
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1607
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58939.1| (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 161

 Score =  249 bits (637), Expect = 4e-66
 Identities = 122/159 (76%), Positives = 140/159 (88%)

>gb|AAN70921.1|AE016736_4 (AE016794) long-chain acyl-CoA thioester hydrolase family protein
           [Pseudomonas putida KT2440]
          Length = 161

 Score =  239 bits (611), Expect = 4e-63
 Identities = 116/157 (73%), Positives = 136/157 (86%)

>emb|CAE34998.1| (BX640451) putative acyl-CoA thioester hydrolase [Bordetella
           bronchiseptica]
          Length = 171

 Score =  214 bits (545), Expect = 2e-55
 Identities = 104/155 (67%), Positives = 129/155 (83%)






 
Structural Features:
COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]
CD-Length = 157 residues,  95.5% aligned
Score =  177 bits (450), Expect = 7e-46
Identities = 70/150 (46%), Positives = 89/150 (59%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25750




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36333




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4303_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4303
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6622
                           PA2693_tr
                           translation of PA2693
                           166
                           99.99
                           99.99
                           0
                           846.0
     

     
     
178740
                           gb|AAG06081.1|AE004697_6
                           (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           166
                           99.99
                           99.99
                           0
                           846.0
     

     
     
178742
                           gb|AAO58939.1|
                           (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           166
                           73.49
                           84.33
                           5
                           633.0
     

     
     
178743
                           gb|AAN70921.1|AE016736_4
                           (AE016794) long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas putida KT2440]
                           166
                           69.87
                           81.92
                           5
                           607.0
     

     
     
178744
                           emb|CAD17354.1|
                           (AL646077) PROBABLE ACYL-COA THIOESTER HYDROLASE-RELATED PROTEIN [Ralstonia solanacearum]
                           166
                           66.26
                           78.31
                           2
                           563.0
     

     






      

          
GC ORFID: 47305How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2693Glimmer Score: 

          
Start: 2419084Stop: 2419584

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2693 translation of PA2693Homolog Bit Score 330.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2922 (ORF: BLASTX 249.0), t_PA2693 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACCTGGCAGCTACCAACTGACCATGAGCGTGCTCATGACCCCCGACAAGGCGAACTTCTCCGGCAAC 
GTCCACGGCGGCGCGCTGCTCAAGCTCCTCGACGAAGTGGCCTTCGCCTGCGCCAAGCGCTACGCCGGACGC 
TACGTGGTGACCCTGTCGGTGGATCAGGTGATCTTCCGCGAGCCGATCCATGTCGGCGAACTGGTGACCTTC 
CTCGCCTCGGTGAACTACACCGGGCGCACTTCGATGGAGGTCGGGGTGAAGGTGATGACCGAGAACATCCAC 
GAGCGCACCGTGCGCCATACCAACAGTTGCTTCTTCACCATGGTGGCGATGGACGACCAGCGCCGGCCGGTG 
GCGGTGCGTCCACTGGAACCGGAGACCGCGATCGAGAAACGCCGCTACGCCCAGGCCCTGGCCCGGCGCGAG 
CAGCGCAAGCTGATGGAACTGCGCTACCAGGAGATCCGCGAACAGGTGGATCACGCGATGCCGGCCTGA