ViewGene
Locus Name:
GeneID:
Location:

GeneID:4302
TrivialName: PA14_32770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32770
PAO1 Ortholog Locus:PA2464
Sequence Length:525
Protein Length:174
Start: 2845921
Stop: 2846445
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05852.1|AE004674_2 (AE004674) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/174 (99%), Positives = 173/174 (99%)
Sequence:
ATGAACGCAAGGATCGCCGCATTGGGACTGCTCCTGCCCCTGGCCGCCGGCAGCGCCGTGGCCACGGAGGAG
GGCAGCTCGGTCAAGGATGCGGCCAAGGCCGCGGTGTCCTCGGCCATCGAGACCGGCAAGAACCTCCTCGGC
GGGGTCAGCGAGGGCATCACCAGCGGCCGCCAGTCGGCCCAGGGCGCTGATGGCGCCAAGGTGGTCTCCGAC
AACGCCGGCTTCGCCGAGATCGGCCAGGTCGAAGTGCTCAAGACCGAGCCGCGCGACCAGCAACTGGCCGTC
ACCCTCGGCTTCAAGAACGACGGCGACGCCACCGTGCGCCTGATCAACCTGACCCAGACCGGCGCGCTGCTG
GTGATCGACAACGATGGCTACTCCAACGCCCTGGTCGCCCTCGCCAACCCCGACGACGTCACCGTCCCGGCC
AAGGCCGGCATCCGCCAGACCTTCGTCTTCGAAGGCGGCGCGGAAGGGATCAAGGCGGTGCGCCTGTGGGGC
AAGGACCTGCCGGTGAAGTGA
Translation:
MNARIAALGLLLPLAAGSAVATEEGSSVKDAAKAAVSSAIETGKNLLGGVSEGITSGRQSAQGADGAKVVSD
NAGFAEIGQVEVLKTEPRDQQLAVTLGFKNDGDATVRLINLTQTGALLVIDNDGYSNALVALANPDDVTVPA
KAGIRQTFVFEGGAEGIKAVRLWGKDLPVK*
AnnotationID:4308GeneID:4302
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2464
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8605




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25748




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4302
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6621
                           PA2464_tr
                           translation of PA2464
                           174
                           99.42
                           99.42
                           0
                           847.0
     

     
     
178739
                           gb|AAG05852.1|AE004674_2
                           (AE004674) hypothetical protein PA2464 [Pseudomonas aeruginosa PAO1]
                           174
                           99.42
                           99.42
                           0
                           847.0
     

     






      

          
GC ORFID: 47304How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2464Glimmer Score: 

          
Start: 2108003Stop: 2107479

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2464 translation of PA2464Homolog Bit Score 330.0

          
Other Homologs:  t_PA2464 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCAAGGATCGCCGCATTGGGACTGCTCCTGCCCCTGGCCGCCGGCAGCGCCGTGGCCACGGAGGAG 
GGCAGCTCGGTCAAGGATGCGGCCAAGGCCGCGGTGTCCTCGGCCATCGAGACCGGCAAGAACCTCCTCGGC 
GGGGTCAGCGAGGGCATCACCAGCGGCCGCCAGTCGGCCCAGGGCGCTGATGGCGCCAAGGTGGTCTCCGAC 
AACGCCGGCTTCGCCGAGATCGGCCAGGTCGAAGTGCTCAAGACCGAGCCGCGCGACCAGCAACTGGCCGTC 
ACCCTCGGCTTCAAGAACGACGGCGACGCCACCGTGCGCCTGATCAACCTGACCCAGACCGGCGCGCTGCTG 
GTGATCGACAACGATGGCTACTCCAACGCCCTGGTCGCCCTCGCCAACCCCGACGACGTCACCGTCCCGGCC 
AAGGCCGGCATCCGCCAGACCTTCGTCTTCGAAGGCGGCGCGGAAGGGATCAAGGCGGTGCGCCTGTGGGGC 
AAGGACCTGCCGGTGAAGTGA