ViewGene

Locus Name:
GeneID:
Location:

GeneID:4301
TrivialName: PA14_41640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41640
PAO1 Ortholog Locus:PA1772
Sequence Length:489
Protein Length:162
Start: 3717074
Stop: 3716586
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05161.1|AE004603_1 (AE004603) probable methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGCATTACGTCACTCCCGATCTGTGCGATGCCTATCCTGAGCTGGTCCAGGTCGTCGAACCCATGTTCAGC
AACTTCGGCGGCCGCGACTCCTTCGGCGGCGAGATCGTCACCATCAAGTGCTTCGAAGACAATTCGCTGGTC
AAGGAGCAGGTCGACAAGGACGGCAAGGGCAAGGTCCTGGTCGTCGATGGCGGTGGTTCGCTGCGCCGCGCC
CTGCTGGGCGACATGCTGGCCGAGAAAGCGGCGAAGAACGGCTGGGAAGGGATCGTCGTATATGGCTGCATC
CGTGACGTCGACGTGATCGCCCAGACCGACCTCGGCGTCCAGGCCCTGGCCAGTCATCCGCTGAAGACCGAC
AAGCGCGGCATCGGCGATCTGAACGTCGCCGTGACCTTCGGCGGCGTCACCTTCCGCCCCGGCGAGTTCGTG
TATGCCGATAACAACGGCATCATCGTTTCTCCGCAGGCCTTGAAGATGCCCGAATAG
Translation:
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRA
LLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFV
YADNNGIIVSPQALKMPE*
AnnotationID:4307GeneID:4301
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 09:09:17
Gene Name:
Confidence Code:3
GeneProduct:putative dimethylmenaquinone methyltransferase
Cell Localization:()
Synonyms:menG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase
Functional Category Confidence Code:5
COGs:pfam03737
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67698.1|AE016401_1 (AE016781) s-adenosylmethionine:2-demethylmenaquinone
           methyltransferase [Pseudomonas putida KT2440]
          Length = 163

 Score =  304 bits (779), Expect = 1e-82
 Identities = 142/161 (88%), Positives = 156/161 (96%)

>gb|AAD45979.1| (AF115334) MenG [Pseudomonas fluorescens]
          Length = 163

 Score =  303 bits (775), Expect = 3e-82
 Identities = 143/162 (88%), Positives = 153/162 (94%)

>gb|AAO55808.1| (AE016864) dimethylmenaquinone methyltransferase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 162

 Score =  286 bits (733), Expect = 2e-77
 Identities = 132/162 (81%), Positives = 153/162 (94%)
Structural Features:
pfam03737, Methyltransf_6, Demethylmenaquinone methyltransferase.
CD-Length = 154 residues, 100.0% aligned
Score =  214 bits (546), Expect = 4e-57
Identities = 96/154 (62%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Genomic Context:
Comment:
ReferenceID:8603
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25746
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37150
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4301_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4301

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6620 PA1772_tr translation of PA1772 162 99.99 99.99 0 845.0
178696 gb|AAG05161.1|AE004603_1 (AE004603) probable methyltransferase [Pseudomonas aeruginosa PAO1] 162 99.99 99.99 0 845.0
178698 gb|AAD45979.1| (AF115334) MenG [Pseudomonas fluorescens] 163 87.73 93.86 1 775.0
178697 gb|AAN67698.1|AE016401_1 (AE016781) s-adenosylmethionine:2-demethylmenaquinone methyltransferase [Pseudomonas putida KT2440] 163 87.11 95.70 1 779.0
178699 gb|AAO55808.1| (AE016864) dimethylmenaquinone methyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 162 81.48 94.44 0 733.0
GC ORFID: 47303How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1772Glimmer Score:
Start: 1236835Stop: 1237323
Length: 489
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1772 translation of PA1772Homolog Bit Score 330.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1068 (ORF: BLASTX 294.0), t_PA1772 (ORF: GLIMMER)
GC ORF Sequence
ATGCATTACGTCACTCCCGATCTGTGCGATGCCTATCCTGAGCTGGTCCAGGTCGTCGAACCCATGTTCAGC
AACTTCGGCGGCCGCGACTCCTTCGGCGGCGAGATCGTCACCATCAAGTGCTTCGAAGACAATTCGCTGGTC
AAGGAGCAGGTCGACAAGGACGGCAAGGGCAAGGTCCTGGTCGTCGATGGCGGTGGTTCGCTGCGCCGCGCC
CTGCTGGGCGACATGCTGGCCGAGAAAGCGGCGAAGAACGGCTGGGAAGGGATCGTCGTATATGGCTGCATC
CGTGACGTCGACGTGATCGCCCAGACCGACCTCGGCGTCCAGGCCCTGGCCAGTCATCCGCTGAAGACCGAC
AAGCGCGGCATCGGCGATCTGAACGTCGCCGTGACCTTCGGCGGCGTCACCTTCCGCCCCGGCGAGTTCGTG
TATGCCGATAACAACGGCATCATCGTTTCTCCGCAGGCCTTGAAGATGCCCGAATAG