ViewGene
Locus Name:
GeneID:
Location:

GeneID:4300
TrivialName: PA14_42460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42460
PAO1 Ortholog Locus:PA1707
Sequence Length:507
Protein Length:168
Start: 3781622
Stop: 3781116
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO91772.1| (AY232997) PcrH [Pseudomonas aeruginosa]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGAACCAGCAAGCGACCCCTTCCGACACCGACCAGCAACAGGCGCTGGAGGCCTTCCTGCGCGACGGCGGC
ACCCTGGCGATGCTTCGCGGACTCAGCGAGGACACCCTGGAGCAGCTCTATGCGCTGGGCTTCAACCAGTAC
CAGGCGGGCAAGTGGGACGACGCGCAGAAGATCTTCCAGGCACTGTGCATGCTCGACCACTACGACGCCCGC
TACTTTCTCGGCCTGGGCGCCTGCCGCCAGTCCCTCGGTCTCTATGAACAGGCCCTGCAGAGCTACAGCTAC
GGCGCGCTGATGGACATCAACGAGCCGCGCTTTCCCTTCCATGCCGCCGAGTGCCACCTGCAACTGGGTGAT
CTCGACGGAGCCGAGAGTGGCTTCTACTCGGCCCGGGCCCTGGCCGCGGCACAGCCGGCGCACGAGGCCCTG
GCCGCGCGTGCCGGCGCCATGTTGGAAGCCGTAACCGCGAGAAAGGATCGAACATATGAATCCGATAACGCT
TGA
Translation:
MNQQATPSDTDQQQALEAFLRDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR
YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL
AARAGAMLEAVTARKDRTYESDNA*
AnnotationID:4306GeneID:4300
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:19
Gene Name:pcrH
Confidence Code:1
GeneProduct:regulatory protein PcrH
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00189
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18054.1| (AY144116) LssH [Photorhabdus luminescens]
          Length = 168

 Score =  236 bits (601), Expect = 5e-62
 Identities = 117/169 (69%), Positives = 139/169 (82%), Gaps = 3/169 (1%)

>emb|CAB54907.1| (AL117189) putative yopB/yopD chaperone [Yersinia pestis]
          Length = 168

 Score =  202 bits (514), Expect = 7e-52
 Identities = 95/162 (58%), Positives = 125/162 (77%)






 
Structural Features:
cd00189, TPR, Tetratricopeptide repeat domain
CD-Length = 100 residues,  97.0% aligned
Score = 42.8 bits (100), Expect = 2e-05
Identities = 26/97 (26%), Positives = 45/97 (46%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8601




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25744




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37209




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4300_cdd.html


    		




 
URL:

















    ReferenceID:37850




  
Author/Investigator(s):
        Allmond LR, Karaca TJ, Nguyen VN, Nguyen T, Wiener-Kronish JP, Sawa T.





  
Title:
        PcrH of Pseudomonas aeruginosa is essential for secretion and assembly of the type III translocon.




  
PubMed:
        14673772


MedLine:
        




    
Source:
J Infect Dis. 2003 Dec 15;188(12):1909-21. Epub 2003 Dec 03.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14673772









           
Homologs By Global Alignment 

           

       



     
Gene ID:4300
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
178681
                           gb|AAO91772.1|
                           (AY232997) PcrH [Pseudomonas aeruginosa]
                           168
                           99.99
                           99.99
                           0
                           871.0
     

     
     
178682
                           gb|AAC45936.1|
                           (AF010149) PcrH [Pseudomonas aeruginosa]
                           168
                           99.99
                           99.99
                           0
                           871.0
     

     
     
6619
                           PA1707_tr
                           translation of PA1707
                           168
                           98.21
                           98.21
                           1
                           846.0
     

     
     
178683
                           gb|AAG05096.1|AE004597_10
                           (AE004597) regulatory protein PcrH [Pseudomonas aeruginosa PAO1]
                           168
                           98.21
                           98.21
                           1
                           846.0
     

     
     
178684
                           emb|CAE16129.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           169
                           69.82
                           82.84
                           3
                           610.0
     

     






      

          
GC ORFID: 47302How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1707Glimmer Score: 

          
Start: 1172287Stop: 1172793

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1707 translation of PA1707Homolog Bit Score 330.0

          
Other Homologs:  t_PA1707 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGCAAGCGACCCCTTCCGACACCGACCAGCAACAGGCGCTGGAGGCCTTCCTGCGCGACGGCGGC 
ACCCTGGCGATGCTTCGCGGACTCAGCGAGGACACCCTGGAGCAGCTCTATGCGCTGGGCTTCAACCAGTAC 
CAGGCGGGCAAGTGGGACGACGCGCAGAAGATCTTCCAGGCACTGTGCATGCTCGACCACTACGACGCCCGC 
TACTTTCTCGGCCTGGGCGCCTGCCGCCAGTCCCTCGGTCTCTATGAACAGGCCCTGCAGAGCTACAGCTAC 
GGCGCGCTGATGGACATCAACGAGCCGCGCTTTCCCTTCCATGCCGCCGAGTGCCACCTGCAACTGGGTGAT 
CTCGACGGAGCCGAGAGTGGCTTCTACTCGGCCCGGGCCCTGGCCGCGGCACAGCCGGCGCACGAGGCCCTG 
GCCGCGCGTGCCGGCGCCATGTTGGAAGCCGTAACCGCGAGAAAGGATCGAACATATGAATCCGATAACGCT 
TGA