ViewGene
Locus Name:
GeneID:
Location:

GeneID:43
TrivialName: PA14_44680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44680
PAO1 Ortholog Locus:PA1527
Sequence Length:3489
Protein Length:1162
Start: 3983270
Stop: 3979782
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04916.1|AE004581_3 (AE004581) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1156/1162 (99%), Positives = 1160/1162 (99%)
Sequence:
ATGCGCCTGAAGAGCATCAAGCTGGCGGGGTTCAAGTCCTTCGTCGATCCGACCACGGTGAACTTCCCCAGC
AACATGGCGGCAGTGGTAGGGCCGAACGGCTGCGGCAAGTCGAACATCATCGACGCGGTGCGCTGGGTGATG
GGCGAAAGCTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGATGTCATCTTCAACGGCTCGAATACCCGC
AAGCCGGTGAGCCAGGCGAGCATCGAGCTGATCTTCGACAACGCCGAGACCACCCTGGTGGGCGAATACGCC
CAGTACGCCGAGATATCCATTCGCCGGCGGGTCTCGCGGGATGGGCAGAACACCTATTTTCTCAACGGCACC
AAGTGCCGGCGGCGCGACATCACCGACATCTTCCTCGGCACCGGCCTGGGGCCGCGCAGCTACTCGATCATC
GAACAGGGCATGATCTCCAAGCTGATCGAGGCGCGTCCGGAAGACCTGCGCAACTTCATCGAGGAAGCCGCG
GGTATTTCCAAGTACAAGGAGCGCCGCCGCGAAACCGAAAGCCGCATCCGTCGGACCCAGGAAAACCTGGCA
CGCCTCACCGACCTGCGCGAAGAGTTGGGGCGGCAACTGGAACGCCTGCACCGGCAGGCCCAGTCGGCGGAA
AAATACCAGGAACACAAGGCCGAGGAGCGCCAGCTCAAGGCCCAGCTGGGTGCCGTGCGCTGGCGCGACCTG
AACGAGCAGGTCGGTCAGCGCGAGCGGGTCATCGGCGACCAGGAGATCGCCTTCGAGGCCCTGGTGGCCGAG
CAGCGTGGTGCCGATGCCGGCATCGAACGGCTGCGCGACGGCCATCACGAGTTGTCCGAACGCTTCAACCAG
GTGCAGGCGCGCTTCTATTCGGTCGGCGGCGACATCGCCCGGGTCGAGCAGAGCATCCAGCATGGCCAGCAG
CGCCAGCGCCAGTTGCAGGACGACTTGCGCGAAGCCGAACGGACCCGCCAGGAAACCGAATCGCACCTTGGG
CACGACCGTACCTTGCTCGCGACCCTGGCCGAGGAAATGGCCATGCTCGCACCGGAACAGGAACTCAGCGCG
GCCGCCGCGGAAGAAGCGGGCATCGCCCTGGAACAGGCCGAGCAGGGCATGCAGGCCTGGCAGCAGCAGTGG
GATGCCTTCAACCAGCAGAGCGCCGAACCCCGCCGCCAGGCCGAGGTGCAGCAGTCGCGCATCCAGCACTTG
GAGCAGAGCCTGGAGCGCCTGCAGGATCGCGAGCGGCGCCTGCAGGACGAGCGTGGCCAGTTGGCGGCCGAC
CCCGAGGACGCGGCGATCCTCGAACTCAACGAACAGGTGGCGATCGCCGAACTGGCCCTGGAAGAACTGCAA
TTGCAGGAGCAGGGCCAAGCCGAGCGGCTCGAACAATTGCGCCAGGAATTGCAGCAACTGGCCGCCGAACAG
CACCAGGCGCAGGGCGAGTTGCAGCGCCTGAACGGTCGCATCGCTTCGCTGGAGGCCCTGCAGCAGGCCGCT
CTCGACCCCGGACAGGGTGCATTGGAGTGGTTGCGCGAGCAGGGCCTGGAACAACGTCCGCGCCTCGCCGAA
GGCTTGCGTGTCGAGCCGGGTTGGGAACTGGCGGTGGAGACCGTGCTCGGCGCGGATCTGCAGGCGGTCTTG
CTGGACGGCTTCGACGGGCTCGCCCTGGCCGGCTTCGGCAAGGGCGAGCTGCGCCTGCTCAGCCCCGCTCAC
GGAGCCGCGACGGCGGCCGGTTCGCTGCTGGACAAGGTCCGCGCCGACGCCGACCTGAGTCCCTGGCTGGCC
CGGGTGAAACCGGTGGAGACCCTGGAACAGGCGCTCGCCCAGCGCGGCGCCCTGGACGACGGCGAGAGCCTG
ATCAGCCGCGATGGCTACTGGGTCGGCCGGCACTTCCTGCGGGTCCGGCGCAGCGACGAGGCCCAAGGCGGC
ATGCTCGCCCGCGCCCAGGAACTGGAGGCGTTGCAGGAACGGCGCGAGGTCCTGGAAACCCGCGTCGCCGAG
GGCGAGGAGCGTCTGGCTGCGGCCCGCGACGAGCAGCGCGAGCTGGAAGGCGCGCGCGAGCAGGTGCGGCGC
CAGGTCCAGGAGGAGGGCCGCCGGCACGGCGAGCTGAAGGCGCAGTTGTCCGCGCAGCAGGCCAAGGTCGAG
CAACTGGTACTGCGTCGCCGCCGTCTCGACGAAGAAGTGGCGGAACTGGCCGAGCAGCGCGCGCTGGAACAG
GAGCAACTGAGCGAGGCGCGCCTGACCCTGCAGGAAGCGCTGGATAGCATGGCGCTGGACACCGAGCGCCGG
GAAACCCTGCTGGCGGAGCGTGACGCCCTGCGCGAACGGCTCGACCGGATTCGCCAGGATGCCCGTACCCAC
AAGGACCATGCGCACCAACTGGCGGTGCGGGTCGGCTCGCTGAGGGCGCAGCACAATTCCACCCAGCAGGCC
CTGGAGCGCCTCGACCAGCAGTCGGCGCGCCTCAACGAGCGTTGCGAACAGCTCAACCTCAATCTGGAGGAG
GGTGCGGCGCCGCTGGAAGAGCTGCGCATGAAGCTCGAGGAGTTGCTGGAGCGACGGATGGCCGTTGAGGAC
GAACTCAAGCAGGCGCGGCTGGCCCTGGAAGACGCCGATCGCGAACTGCGCGAGGTGGAGAAGCGCCGCGGC
CAGGCCGAGCAGCAATCGCAACTGCTGCGTGGCCAGCTGGAGCAGCAGCGCCTGGAGTGGCAGGGGCTGGTG
GTGCGGCGCAAGGCCTTGCAGGAGCAGCTCGCCGAAGACGGCTACGACCTGCACACGGTACTGGCCAACCTG
CCCCTGGATGCCAGCGAACGCGAATGGGAGGAGCGTCTCGAGAGTCTCGCGGCGCGTATCCAGCGTCTGGGG
CCGATCAACCTGGCGGCGATCGAGGAGTACCAGCAGCAGTCCGAGCGCAAGCGCTACCTGGACTCGCAGAAC
GACGACCTGGCCGAAGCGCTGGAGACGCTGGAAAACGTCATCCGCAAGATCGACCGGGAAACCCGCAATCGC
TTCAAGGAAACCTTCGACCAGATCAATGCTGGCCTTCAGGCATTGTTCCCGAAGGTATTCGGCGGCGGTACG
GCATATCTGGAACTTACCGGCGAAGATCTACTCGATACCGGTGTGGCGATCATGGCGCGCCCGCCGGGCAAG
AAGAACAGCACTATCCACTTGTTGTCCGGCGGGGAAAAGGCGCTGACCGCGCTGGCGCTGGTATTCGCCATC
TTCCAGTTGAACCCGGCGCCGTTCTGCATGCTCGACGAAGTCGATGCGCCATTGGACGATGCCAACGTCGGA
CGTTATGCGCGATTGGTGAAGGAGATGTCGGAAAAGGTGCAGTTCATCTATATCACCCACAACAAGATCGCC
ATGGAAATGGCCGATCAGTTGATGGGCGTGACCATGCATGAGCCGGGCTGTTCACGGCTTGTTGCAGTTGAC
GTGGAAGAGGCGGTCGCATTGGCTGAAGCCTGA
Translation:
MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGSNTR
KPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGTKCRRRDITDIFLGTGLGPRSYSII
EQGMISKLIEARPEDLRNFIEEAAGISKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAE
KYQEHKAEERQLKAQLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHHELSERFNQ
VQARFYSVGGDIARVEQSIQHGQQRQRQLQDDLREAERTRQETESHLGHDRTLLATLAEEMAMLAPEQELSA
AAAEEAGIALEQAEQGMQAWQQQWDAFNQQSAEPRRQAEVQQSRIQHLEQSLERLQDRERRLQDERGQLAAD
PEDAAILELNEQVAIAELALEELQLQEQGQAERLEQLRQELQQLAAEQHQAQGELQRLNGRIASLEALQQAA
LDPGQGALEWLREQGLEQRPRLAEGLRVEPGWELAVETVLGADLQAVLLDGFDGLALAGFGKGELRLLSPAH
GAATAAGSLLDKVRADADLSPWLARVKPVETLEQALAQRGALDDGESLISRDGYWVGRHFLRVRRSDEAQGG
MLARAQELEALQERREVLETRVAEGEERLAAARDEQRELEGAREQVRRQVQEEGRRHGELKAQLSAQQAKVE
QLVLRRRRLDEEVAELAEQRALEQEQLSEARLTLQEALDSMALDTERRETLLAERDALRERLDRIRQDARTH
KDHAHQLAVRVGSLRAQHNSTQQALERLDQQSARLNERCEQLNLNLEEGAAPLEELRMKLEELLERRMAVED
ELKQARLALEDADRELREVEKRRGQAEQQSQLLRGQLEQQRLEWQGLVVRRKALQEQLAEDGYDLHTVLANL
PLDASEREWEERLESLAARIQRLGPINLAAIEEYQQQSERKRYLDSQNDDLAEALETLENVIRKIDRETRNR
FKETFDQINAGLQALFPKVFGGGTAYLELTGEDLLDTGVAIMARPPGKKNSTIHLLSGGEKALTALALVFAI
FQLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSEKVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVD
VEEAVALAEA*
AnnotationID:53GeneID:43
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:38
Gene Name:
Confidence Code:3
GeneProduct:putative chromosome segregation protein
Cell Localization:()
Synonyms:smc
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1196
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57127.1| (AE016869) chromosome segregation SMC protein, putative [Pseudomonas
            syringae pv. tomato str. DC3000]
          Length = 1162

 Score = 1769 bits (4582), Expect = 0.0
 Identities = 912/1162 (78%), Positives = 1020/1162 (87%)

>gb|AAN69856.1|AE016624_7 (AE016790) chromosome segregation SMC protein [Pseudomonas putida
            KT2440]
          Length = 1162

 Score = 1760 bits (4558), Expect = 0.0
 Identities = 905/1162 (77%), Positives = 1020/1162 (87%)

>gb|AAM36491.1| (AE011794) chromosome segregation protein [Xanthomonas axonopodis pv.
            citri str. 306]
          Length = 1211

 Score = 1011 bits (2613), Expect = 0.0
 Identities = 567/1173 (48%), Positives = 768/1173 (65%), Gaps = 18/1173 (1%)








 
Structural Features:
COG1196, Smc, Chromosome segregation ATPases 
[Cell division and chromosome partitioning]
CD-Length = 1163 residues, 100.0% aligned
Score =  664 bits (1715), Expect = 0.0
Identities = 449/1185 (37%), Positives = 661/1185 (55%), Gaps = 47/1185 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:89




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37322




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:43_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:43
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
84
                           PA1527_tr
                           translation of PA1527
                           1162
                           99.48
                           99.82
                           0
                           5759.0
     

     
     
11614
                           gb|AAG04916.1|AE004581_3
                           (AE004581) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           1162
                           99.48
                           99.82
                           0
                           5759.0
     

     
     
11615
                           gb|AAO57127.1|
                           (AE016869) chromosome segregation SMC protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           1162
                           78.48
                           87.77
                           0
                           4582.0
     

     
     
11616
                           gb|AAN69856.1|AE016624_7
                           (AE016790) chromosome segregation SMC protein [Pseudomonas putida KT2440]
                           1162
                           77.88
                           87.77
                           0
                           4558.0
     

     
     
11618
                           gb|AAM40862.1|
                           (AE012257) chromosome segregation protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           1177
                           49.02
                           65.50
                           25
                           2620.0
     

     






      

          
GC ORFID: 43045How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1527Glimmer Score: 

          
Start: 970639Stop: 974127

          
Length: 3489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1527 translation of PA1527Homolog Bit Score 2222.0

          
Other Homologs:  t_PA1527 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGAAGAGCATCAAGCTGGCGGGGTTCAAGTCCTTCGTCGATCCGACCACGGTGAACTTCCCCAGC 
AACATGGCGGCAGTGGTAGGGCCGAACGGCTGCGGCAAGTCGAACATCATCGACGCGGTGCGCTGGGTGATG 
GGCGAAAGCTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGATGTCATCTTCAACGGCTCGAATACCCGC 
AAGCCGGTGAGCCAGGCGAGCATCGAGCTGATCTTCGACAACGCCGAGACCACCCTGGTGGGCGAATACGCC 
CAGTACGCCGAGATATCCATTCGCCGGCGGGTCTCGCGGGATGGGCAGAACACCTATTTTCTCAACGGCACC 
AAGTGCCGGCGGCGCGACATCACCGACATCTTCCTCGGCACCGGCCTGGGGCCGCGCAGCTACTCGATCATC 
GAACAGGGCATGATCTCCAAGCTGATCGAGGCGCGTCCGGAAGACCTGCGCAACTTCATCGAGGAAGCCGCG 
GGTATTTCCAAGTACAAGGAGCGCCGCCGCGAAACCGAAAGCCGCATCCGTCGGACCCAGGAAAACCTGGCA 
CGCCTCACCGACCTGCGCGAAGAGTTGGGGCGGCAACTGGAACGCCTGCACCGGCAGGCCCAGTCGGCGGAA 
AAATACCAGGAACACAAGGCCGAGGAGCGCCAGCTCAAGGCCCAGCTGGGTGCCGTGCGCTGGCGCGACCTG 
AACGAGCAGGTCGGTCAGCGCGAGCGGGTCATCGGCGACCAGGAGATCGCCTTCGAGGCCCTGGTGGCCGAG 
CAGCGTGGTGCCGATGCCGGCATCGAACGGCTGCGCGACGGCCATCACGAGTTGTCCGAACGCTTCAACCAG 
GTGCAGGCGCGCTTCTATTCGGTCGGCGGCGACATCGCCCGGGTCGAGCAGAGCATCCAGCATGGCCAGCAG 
CGCCAGCGCCAGTTGCAGGACGACTTGCGCGAAGCCGAACGGACCCGCCAGGAAACCGAATCGCACCTTGGG 
CACGACCGTACCTTGCTCGCGACCCTGGCCGAGGAAATGGCCATGCTCGCACCGGAACAGGAACTCAGCGCG 
GCCGCCGCGGAAGAAGCGGGCATCGCCCTGGAACAGGCCGAGCAGGGCATGCAGGCCTGGCAGCAGCAGTGG 
GATGCCTTCAACCAGCAGAGCGCCGAACCCCGCCGCCAGGCCGAGGTGCAGCAGTCGCGCATCCAGCACTTG 
GAGCAGAGCCTGGAGCGCCTGCAGGATCGCGAGCGGCGCCTGCAGGACGAGCGTGGCCAGTTGGCGGCCGAC 
CCCGAGGACGCGGCGATCCTCGAACTCAACGAACAGGTGGCGATCGCCGAACTGGCCCTGGAAGAACTGCAA 
TTGCAGGAGCAGGGCCAAGCCGAGCGGCTCGAACAATTGCGCCAGGAATTGCAGCAACTGGCCGCCGAACAG 
CACCAGGCGCAGGGCGAGTTGCAGCGCCTGAACGGTCGCATCGCTTCGCTGGAGGCCCTGCAGCAGGCCGCT 
CTCGACCCCGGACAGGGTGCATTGGAGTGGTTGCGCGAGCAGGGCCTGGAACAACGTCCGCGCCTCGCCGAA 
GGCTTGCGTGTCGAGCCGGGTTGGGAACTGGCGGTGGAGACCGTGCTCGGCGCGGATCTGCAGGCGGTCTTG 
CTGGACGGCTTCGACGGGCTCGCCCTGGCCGGCTTCGGCAAGGGCGAGCTGCGCCTGCTCAGCCCCGCTCAC 
GGAGCCGCGACGGCGGCCGGTTCGCTGCTGGACAAGGTCCGCGCCGACGCCGACCTGAGTCCCTGGCTGGCC 
CGGGTGAAACCGGTGGAGACCCTGGAACAGGCGCTCGCCCAGCGCGGCGCCCTGGACGACGGCGAGAGCCTG 
ATCAGCCGCGATGGCTACTGGGTCGGCCGGCACTTCCTGCGGGTCCGGCGCAGCGACGAGGCCCAAGGCGGC 
ATGCTCGCCCGCGCCCAGGAACTGGAGGCGTTGCAGGAACGGCGCGAGGTCCTGGAAACCCGCGTCGCCGAG 
GGCGAGGAGCGTCTGGCTGCGGCCCGCGACGAGCAGCGCGAGCTGGAAGGCGCGCGCGAGCAGGTGCGGCGC 
CAGGTCCAGGAGGAGGGCCGCCGGCACGGCGAGCTGAAGGCGCAGTTGTCCGCGCAGCAGGCCAAGGTCGAG 
CAACTGGTACTGCGTCGCCGCCGTCTCGACGAAGAAGTGGCGGAACTGGCCGAGCAGCGCGCGCTGGAACAG 
GAGCAACTGAGCGAGGCGCGCCTGACCCTGCAGGAAGCGCTGGATAGCATGGCGCTGGACACCGAGCGCCGG 
GAAACCCTGCTGGCGGAGCGTGACGCCCTGCGCGAACGGCTCGACCGGATTCGCCAGGATGCCCGTACCCAC 
AAGGACCATGCGCACCAACTGGCGGTGCGGGTCGGCTCGCTGAGGGCGCAGCACAATTCCACCCAGCAGGCC 
CTGGAGCGCCTCGACCAGCAGTCGGCGCGCCTCAACGAGCGTTGCGAACAGCTCAACCTCAATCTGGAGGAG 
GGTGCGGCGCCGCTGGAAGAGCTGCGCATGAAGCTCGAGGAGTTGCTGGAGCGACGGATGGCCGTTGAGGAC 
GAACTCAAGCAGGCGCGGCTGGCCCTGGAAGACGCCGATCGCGAACTGCGCGAGGTGGAGAAGCGCCGCGGC 
CAGGCCGAGCAGCAATCGCAACTGCTGCGTGGCCAGCTGGAGCAGCAGCGCCTGGAGTGGCAGGGGCTGGTG 
GTGCGGCGCAAGGCCTTGCAGGAGCAGCTCGCCGAAGACGGCTACGACCTGCACACGGTACTGGCCAACCTG 
CCCCTGGATGCCAGCGAACGCGAATGGGAGGAGCGTCTCGAGAGTCTCGCGGCGCGTATCCAGCGTCTGGGG 
CCGATCAACCTGGCGGCGATCGAGGAGTACCAGCAGCAGTCCGAGCGCAAGCGCTACCTGGACTCGCAGAAC 
GACGACCTGGCCGAAGCGCTGGAGACGCTGGAAAACGTCATCCGCAAGATCGACCGGGAAACCCGCAATCGC 
TTCAAGGAAACCTTCGACCAGATCAATGCTGGCCTTCAGGCATTGTTCCCGAAGGTATTCGGCGGCGGTACG 
GCATATCTGGAACTTACCGGCGAAGATCTACTCGATACCGGTGTGGCGATCATGGCGCGCCCGCCGGGCAAG 
AAGAACAGCACTATCCACTTGTTGTCCGGCGGGGAAAAGGCGCTGACCGCGCTGGCGCTGGTATTCGCCATC 
TTCCAGTTGAACCCGGCGCCGTTCTGCATGCTCGACGAAGTCGATGCGCCATTGGACGATGCCAACGTCGGA 
CGTTATGCGCGATTGGTGAAGGAGATGTCGGAAAAGGTGCAGTTCATCTATATCACCCACAACAAGATCGCC 
ATGGAAATGGCCGATCAGTTGATGGGCGTGACCATGCATGAGCCGGGCTGTTCACGGCTTGTTGCAGTTGAC 
GTGGAAGAGGCGGTCGCATTGGCTGAAGCCTGA