ViewGene

Locus Name:
GeneID:
Location:

GeneID:4299
TrivialName: PA14_43780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43780
PAO1 Ortholog Locus:PA1602
Sequence Length:492
Protein Length:163
Start: 3897484
Stop: 3897975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04991.1|AE004588_4 (AE004588) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 161/163 (98%), Positives = 162/163 (99%)
Sequence:
ATGAGCGATGCCCTTGCCCTGACCGTCAACGGTCAGTCCCTGCGCCTCGATGTCGCCCCCGATACCCCCCTG
CTCTATGTCTTGCGCAACGACCTGCAACTGAACGGTCCCAAGTTCGGCTGCGGCCTCGGCGAGTGCGGCGCC
TGCACCGTGCTGATGGATGGCGTCGCCACCCGCTCCTGCATCACCCCGGTGGAGGCTGCCGTGGGCCGCCAG
GTGGTTACCCTCGAAGGACTCGGCGATGCCGCCCATCCCCATCCGCTGCAACAGGCCTTCATCGACGAACAG
GCCGCCCAATGCGGCTACTGCATCAACGGCATGGTGATGACCGCCAAGGCGTTGCTGGATCGCAACCCGAAC
CCCAGCGACGGCGAGATCCGCCAGGAATTGGCCTACAACCTGTGTCGCTGCGGCACCCATGTGGAGATTCTC
AAGGCCGTGCGGCGTGCCGCCGAGAGCCTGAAGGAGCGTCAGGAGGAGCACCCGGCATGA
Translation:
MSDALALTVNGQSLRLDVAPDTPLLYVLRNDLQLNGPKFGCGLGECGACTVLMDGVATRSCITPVEAAVGRQ
VVTLEGLGDAAHPHPLQQAFIDEQAAQCGYCINGMVMTAKALLDRNPNPSDGEIRQELAYNLCRCGTHVEIL
KAVRRAAESLKERQEEHPA*
AnnotationID:4305GeneID:4299
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 08:08:36
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1602
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2080,pfam01799
Secondary Functional Category(ies):carbon compound metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69541.1|AE016587_7 (AE016788) isoquinoline 1-oxidoreductase, putative [Pseudomonas
           putida KT2440]
          Length = 157

 Score =  236 bits (603), Expect = 3e-62
 Identities = 109/156 (69%), Positives = 129/156 (82%)

>emb|CAE42235.1| (BX640416) probable oxidoreductase [Bordetella pertussis]
          Length = 173

 Score =  207 bits (527), Expect = 2e-53
 Identities = 99/152 (65%), Positives = 113/152 (74%)

>emb|CAC48789.1| (AL603643) putative oxidoreductase subunit protein [Sinorhizobium
           meliloti]
          Length = 165

 Score =  194 bits (492), Expect = 2e-49
 Identities = 90/151 (59%), Positives = 116/151 (76%)

Structural Features:
COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, 
small subunit CoxS/CutS homologs 
[Energy production and conversion]
CD-Length = 156 residues,  98.7% aligned
Score =  206 bits (526), Expect = 1e-54
Identities = 82/154 (53%), Positives = 105/154 (68%), Gaps = 1/154 (0%)

pfam01799, Fer2_2, [2Fe-2S] binding domain.
CD-Length = 76 residues, 100.0% aligned
Score = 93.0 bits (231), Expect = 1e-20
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Genomic Context:
Comment:
ReferenceID:8599
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25742
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37273
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4299_cdd.html
URL:
ReferenceID:38143
Author/Investigator(s): Lehmann M, Tshisuaka B, Fetzner S, Lingens F.
Title: Molecular cloning of the isoquinoline 1-oxidoreductase genes from Pseudomonas diminuta 7, structural analysis of iorA and iorB, and sequence comparisons with other molybdenum-containing hydroxylases.
PubMed: 7782304
MedLine:
Source:
J Biol Chem. 1995 Jun 16;270(24):14420-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7782304
ReferenceID:38144
Author/Investigator(s): Lehmann M, Tshisuaka B, Fetzner S, Roger P, Lingens F.
Title: Purification and characterization of isoquinoline 1-oxidoreductase from Pseudomonas diminuta 7, a novel molybdenum-containing hydroxylase.
PubMed: 8157655
MedLine:
Source:
J Biol Chem. 1994 Apr 15;269(15):11254-60.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8157655
Homologs By Global Alignment
Gene ID:4299

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6615 PA1602_tr translation of PA1602 163 98.77 99.38 0 845.0
178584 gb|AAG04991.1|AE004588_4 (AE004588) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 163 98.77 99.38 0 845.0
178585 gb|AAN69541.1|AE016587_7 (AE016788) isoquinoline 1-oxidoreductase, putative [Pseudomonas putida KT2440] 163 66.87 79.14 6 601.0
178586 dbj|BAC49086.1| (AP005949) bll3821 [Bradyrhizobium japonicum USDA 110] 164 61.58 71.34 5 536.0
178588 emb|CAE32274.1| (BX640442) probable oxidoreductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 166 59.03 69.27 7 520.0
GC ORFID: 47301How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1602Glimmer Score:
Start: 1056425Stop: 1055934
Length: 492
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1602 translation of PA1602Homolog Bit Score 330.0
Other Homologs: t_PA2379 (ORF: BLASTX 151.0), t_PA1881 (ORF: BLASTX 149.0), psyr_15may02_Scaffold4_revised_gene5392 (ORF: BLASTX 134.0), t_PA1931 (ORF: BLASTX 120.0), t_PA1602 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGATGCCCTTGCCCTGACCGTCAACGGTCAGTCCCTGCGCCTCGATGTCGCCCCCGATACCCCCCTG
CTCTATGTCTTGCGCAACGACCTGCAACTGAACGGTCCCAAGTTCGGCTGCGGCCTCGGCGAGTGCGGCGCC
TGCACCGTGCTGATGGATGGCGTCGCCACCCGCTCCTGCATCACCCCGGTGGAGGCTGCCGTGGGCCGCCAG
GTGGTTACCCTCGAAGGACTCGGCGATGCCGCCCATCCCCATCCGCTGCAACAGGCCTTCATCGACGAACAG
GCCGCCCAATGCGGCTACTGCATCAACGGCATGGTGATGACCGCCAAGGCGTTGCTGGATCGCAACCCGAAC
CCCAGCGACGGCGAGATCCGCCAGGAATTGGCCTACAACCTGTGTCGCTGCGGCACCCATGTGGAGATTCTC
AAGGCCGTGCGGCGTGCCGCCGAGAGCCTGAAGGAGCGTCAGGAGGAGCACCCGGCATGA