ViewGene

Locus Name:
GeneID:
Location:

GeneID:4298
TrivialName: PA14_04070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04070
PAO1 Ortholog Locus:PA0312
Sequence Length:495
Protein Length:164
Start: 366575
Stop: 367069
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03701.1|AE004469_6 (AE004469) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 163/164 (99%), Positives = 164/164 (100%)
Sequence:
ATGCAGAAGGTTCTGGTCAGCCGTTGCCTGCTGGGCCACCTGGTGCGCTACGACGGTGGCAGCCATGGCCCG
TTCGACCTGCTCTCGCGCTGGCATGCGCAGGGGCGGATCGTCGCCCTTTGCCCGGAGGTCGCCGGCGGCCTG
CCGACGCCCCGCCCGCCAGCGGAGATCCCCGGCGGCCAGGGCGGCGAAGTGCTGGACCGGCTGAACCGGGTC
TTCACCGTCGACGGCGAGGATGTCAGCGAAGCATTCCTGCTGGGTGCGGAGGCGGCAGTGGAGCTGGTCCGC
CGCCATGACATCCGGATGGCCGTGCTCAAGGCGCGCAGTCCTTCCTGCGGCAACCTGGAGAACTACGACGGG
CGCTTCAACGGCAGCCGGGTCGCCGGCGAGGGCGTCACCGCCGCCGCCCTCAAGCGCATGGGCGTGCTGGTC
TTCAACGAAGACGAGCTGGACCGCGCCGCGGTCTGCCTGGCCGGCCTCGACGCCGGCGGCTGA
Translation:
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRV
FTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGSRVAGEGVTAAALKRMGVLV
FNEDELDRAAVCLAGLDAGG*
AnnotationID:4304GeneID:4298
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0312
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8597
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25740
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33645
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4298_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4298

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6614 PA0312_tr translation of PA0312 164 99.39 99.99 0 848.0
178562 gb|AAG03701.1|AE004469_6 (AE004469) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 164 99.39 99.99 0 848.0
178563 gb|AAN70723.1|AE016716_2 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 169 62.13 72.18 7 518.0
178564 emb|CAE40719.1| (BX640411) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 166 57.83 68.67 2 440.0
178565 emb|CAE39469.1| (BX640436) conserved hypothetical protein [Bordetella parapertussis] 166 57.83 68.07 2 438.0
GC ORFID: 47300How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0312Glimmer Score:
Start: 6167917Stop: 6168411
Length: 495
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0312 translation of PA0312Homolog Bit Score 331.0
Other Homologs: t_PA0312 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGAAGGTTCTGGTCAGCCGTTGCCTGCTGGGCCACCTGGTGCGCTACGACGGTGGCAGCCATGGCCCG
TTCGACCTGCTCTCGCGCTGGCATGCGCAGGGGCGGATCGTCGCCCTTTGCCCGGAGGTCGCCGGCGGCCTG
CCGACGCCCCGCCCGCCAGCGGAGATCCCCGGCGGCCAGGGCGGCGAAGTGCTGGACCGGCTGAACCGGGTC
TTCACCGTCGACGGCGAGGATGTCAGCGAAGCATTCCTGCTGGGTGCGGAGGCGGCAGTGGAGCTGGTCCGC
CGCCATGACATCCGGATGGCCGTGCTCAAGGCGCGCAGTCCTTCCTGCGGCAACCTGGAGAACTACGACGGG
CGCTTCAACGGCAGCCGGGTCGCCGGCGAGGGCGTCACCGCCGCCGCCCTCAAGCGCATGGGCGTGCTGGTC
TTCAACGAAGACGAGCTGGACCGCGCCGCGGTCTGCCTGGCCGGCCTCGACGCCGGCGGCTGA