ViewGene
Locus Name:
GeneID:
Location:

GeneID:4297
TrivialName: PA14_01550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01550
PAO1 Ortholog Locus:PA0127
Sequence Length:501
Protein Length:166
Start: 142886
Stop: 143386
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03517.1|AE004450_12 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/166 (98%), Positives = 166/166 (100%)
Sequence:
ATGCGCCTGCCTGCGAACCTCGGCCGCCTGCTGCCGGCCCTGTGCCTGGGCGTCCTGTTGAGCGCCTGCAGC
ACCTTCGGCCAGCGCGATCCGTTGCGTATCGACCTGGTCGGCCTGGAACCCCTGCCGGGGCAAGGCATGGAG
ATGCGCTTCATGGTCAAGCTGCGGGTACAGAACCCCAACGACGAGCCGATCGAATACAACGGCATCGCCCTC
AACCTCGACGTCAACGGCCAGCCCCTGGCCAGCGGCGTCAGCGACCAGACCGGCGAGGTGCCGCGCTTCGGC
GAGCGGGTGGTGAGCGTGCCGCTGACCGTCTCCGCCTTTTCCGCCTTCCGCCAGGCCTGGGGCCTGAGCAAC
AACGCGCCGACCCGGGGCATGCCCTACGTGGTGAAGGGCAAGCTCGCCGGAGGCCTGTTCGGCACCGTGCGC
TTCAGCGAAAAGGGCACCCTCGACTTCTCCGGGCCGGCCGTCGGCGCGCCGAAGACCAAGGGGCTCTGA
Translation:
MRLPANLGRLLPALCLGVLLSACSTFGQRDPLRIDLVGLEPLPGQGMEMRFMVKLRVQNPNDEPIEYNGIAL
NLDVNGQPLASGVSDQTGEVPRFGERVVSVPLTVSAFSAFRQAWGLSNNAPTRGMPYVVKGKLAGGLFGTVR
FSEKGTLDFSGPAVGAPKTKGL*
AnnotationID:4303GeneID:4297
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:47
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0127
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67804.1|AE016411_9 (AE016782) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 159

 Score =  173 bits (438), Expect = 4e-43
 Identities = 82/144 (56%), Positives = 109/144 (75%)

>gb|AAO56650.1| (AE016867) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 159

 Score =  168 bits (426), Expect = 1e-41
 Identities = 85/144 (59%), Positives = 109/144 (75%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25738




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33503




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4297_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4297
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6613
                           PA0127_tr
                           translation of PA0127
                           166
                           98.79
                           99.99
                           0
                           848.0
     

     
     
178558
                           gb|AAG03517.1|AE004450_12
                           (AE004450) hypothetical protein PA0127 [Pseudomonas aeruginosa PAO1]
                           166
                           98.79
                           99.99
                           0
                           848.0
     

     
     
178559
                           gb|AAK50293.1|U66917_61
                           (U66917) hypothetical protein [Pseudomonas sp. ADP]
                           170
                           57.64
                           71.76
                           17
                           492.0
     

     
     
178561
                           gb|AAO56650.1|
                           (AE016867) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           169
                           53.84
                           68.04
                           13
                           422.0
     

     
     
178560
                           gb|AAN67804.1|AE016411_9
                           (AE016782) lipoprotein, putative [Pseudomonas putida KT2440]
                           170
                           50.58
                           67.05
                           15
                           429.0
     

     






      

          
GC ORFID: 47299How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0127Glimmer Score: 

          
Start: 5944225Stop: 5944725

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0127 translation of PA0127Homolog Bit Score 331.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5841 (ORF: BLASTX 169.0), t_PA0127 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGCCTGCGAACCTCGGCCGCCTGCTGCCGGCCCTGTGCCTGGGCGTCCTGTTGAGCGCCTGCAGC 
ACCTTCGGCCAGCGCGATCCGTTGCGTATCGACCTGGTCGGCCTGGAACCCCTGCCGGGGCAAGGCATGGAG 
ATGCGCTTCATGGTCAAGCTGCGGGTACAGAACCCCAACGACGAGCCGATCGAATACAACGGCATCGCCCTC 
AACCTCGACGTCAACGGCCAGCCCCTGGCCAGCGGCGTCAGCGACCAGACCGGCGAGGTGCCGCGCTTCGGC 
GAGCGGGTGGTGAGCGTGCCGCTGACCGTCTCCGCCTTTTCCGCCTTCCGCCAGGCCTGGGGCCTGAGCAAC 
AACGCGCCGACCCGGGGCATGCCCTACGTGGTGAAGGGCAAGCTCGCCGGAGGCCTGTTCGGCACCGTGCGC 
TTCAGCGAAAAGGGCACCCTCGACTTCTCCGGGCCGGCCGTCGGCGCGCCGAAGACCAAGGGGCTCTGA