ViewGene
Locus Name:
GeneID:
Location:

GeneID:4296
TrivialName: PA14_55790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55790
PAO1 Ortholog Locus:PA4294
Sequence Length:507
Protein Length:168
Start: 4983310
Stop: 4982804
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07682.1|AE004845_8 (AE004845) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/168 (99%), Positives = 167/168 (99%)
Sequence:
ATGACGACTAGTATTAAGGATGCGGATCGGGGATGTCAGCTCATGCTCGGAAAAGCTTCCCGGCGACGCCAG
CACGGCGCCGTCGCCATCGAATTCACAGCGATCTTCCTGCTGTTTTTCGCGCTGGTCTACGGTCTGATCAGC
TACAGCATTCCTTTGCTCATGTTGCAGTCGTTCAACGATGCCGCTGCCGTGGGGGCCCGTGCGGCGATCGCT
GTCGATCCCTCCGATGCGGGCTACGAGAGCCTCGCCGAAGCCCGTGCCAGGGACGAGTTGCTCGCGCGCCTG
GACTGGATGCCGGCGGCCTGGCGGGCGAACCTCCAGCCCTGTGCCGGCAATGGCCAGTACGCCGACTACGTC
AGCGCCACGTCGCGGATCGAGGTCTGCGTGCAGTACCCGTACGGCGATCCGGGCAAGGCGATCATCCCCGTG
CTGAGCTTCCCCGGCATCGGCGCGATTCCCAACCTGCCGCAGACGCTGAAGGCGAGTGCCAACCTGTTGCTG
TGA
Translation:
MTTSIKDADRGCQLMLGKASRRRQHGAVAIEFTAIFLLFFALVYGLISYSIPLLMLQSFNDAAAVGARAAIA
VDPSDAGYESLAEARARDELLARLDWMPAAWRANLQPCAGNGQYADYVSATSRIEVCVQYPYGDPGKAIIPV
LSFPGIGAIPNLPQTLKASANLLL*
AnnotationID:4302GeneID:4296
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 12:12:31
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4294
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4961
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4961, TadG, Flp pilus assembly protein TadG 
[Intracellular trafficking and secretion]
CD-Length = 185 residues,  93.0% aligned
Score = 77.5 bits (190), Expect = 8e-16






   
Genomic Context:






   
Comment:


















    ReferenceID:8593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25736




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36656




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4296_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4296
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6612
                           PA4294_tr
                           translation of PA4294
                           168
                           99.40
                           99.40
                           0
                           849.0
     

     
     
178556
                           gb|AAG07682.1|AE004845_8
                           (AE004845) hypothetical protein PA4294 [Pseudomonas aeruginosa PAO1]
                           168
                           99.40
                           99.40
                           0
                           849.0
     

     
     
178557
                           gb|AAO58263.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           35.39
                           53.93
                           37
                           293.0
     

     






      

          
GC ORFID: 47298How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4294Glimmer Score: 

          
Start: 4246986Stop: 4246480

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4294 translation of PA4294Homolog Bit Score 331.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5319 (ORF: BLASTX 117.0), t_PA4294 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACTAGTATTAAGGATGCGGATCGGGGATGTCAGCTCATGCTCGGAAAAGCTTCCCGGCGACGCCAG 
CACGGCGCCGTCGCCATCGAATTCACAGCGATCTTCCTGCTGTTTTTCGCGCTGGTCTACGGTCTGATCAGC 
TACAGCATTCCTTTGCTCATGTTGCAGTCGTTCAACGATGCCGCTGCCGTGGGGGCCCGTGCGGCGATCGCT 
GTCGATCCCTCCGATGCGGGCTACGAGAGCCTCGCCGAAGCCCGTGCCAGGGACGAGTTGCTCGCGCGCCTG 
GACTGGATGCCGGCGGCCTGGCGGGCGAACCTCCAGCCCTGTGCCGGCAATGGCCAGTACGCCGACTACGTC 
AGCGCCACGTCGCGGATCGAGGTCTGCGTGCAGTACCCGTACGGCGATCCGGGCAAGGCGATCATCCCCGTG 
CTGAGCTTCCCCGGCATCGGCGCGATTCCCAACCTGCCGCAGACGCTGAAGGCGAGTGCCAACCTGTTGCTG 
TGA