ViewGene
Locus Name:
GeneID:
Location:

GeneID:4294
TrivialName: PA14_34030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34030
PAO1 Ortholog Locus:PA2367
Sequence Length:498
Protein Length:165
Start: 3027583
Stop: 3027086
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05755.1|AE004663_1 (AE004663) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/165 (100%), Positives = 165/165 (100%)
Sequence:
ATGGATGCGATCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAG
ATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCAGCAACTCGGAGCGCACC
TCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAA
TACTGCTGCGCCGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGG
CAGATCATGCCCTTCATCGTCTACACCCTGAACAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCC
GGCGGCAAGCCGGTGGAGACCCTGTCGCTGAACTTCACCAAGATCAAGTGGGAGCTGACCGCGCAGAAGGAC
GACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCCAACCAGTTGGTCAAGTGA
Translation:
MDAIILDFGSDIKGDSLLVGYENKIEIMSYSHNVAMQVTNDVSNSERTSGKPHVGEFTLTKFIDTSTPTLNE
YCCAGKPIAEATITIGRNAAEGNGQIMPFIVYTLNNVVLSNVSVSGGAGGKPVETLSLNFTKIKWELTAQKD
DGTKEGTAASTWDLAANQLVK*
AnnotationID:4300GeneID:4294
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2367
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22005.1| (AE008844) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 161

 Score =  203 bits (516), Expect = 4e-52
 Identities = 100/165 (60%), Positives = 130/165 (78%), Gaps = 4/165 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25732




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32912




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4294_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4294
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6606
                           PA2367_tr
                           translation of PA2367
                           165
                           99.99
                           99.99
                           0
                           848.0
     

     
     
178433
                           gb|AAG05755.1|AE004663_1
                           (AE004663) hypothetical protein PA2367 [Pseudomonas aeruginosa PAO1]
                           165
                           99.99
                           99.99
                           0
                           848.0
     

     
     
178434
                           gb|AAO70598.1|
                           (AE016844) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           165
                           61.21
                           79.39
                           4
                           524.0
     

     
     
178435
                           emb|CAD02963.1|
                           (AL627277) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           165
                           61.21
                           79.39
                           4
                           524.0
     

     
     
178436
                           gb|AAL22005.1|
                           (AE008844) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           165
                           60.60
                           78.78
                           4
                           521.0
     

     






      

          
GC ORFID: 47296How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2367Glimmer Score: 

          
Start: 1926333Stop: 1926830

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2367 translation of PA2367Homolog Bit Score 331.0

          
Other Homologs:  t_PA2367 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGCGATCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAG 
ATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCAGCAACTCGGAGCGCACC 
TCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAA 
TACTGCTGCGCCGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGG 
CAGATCATGCCCTTCATCGTCTACACCCTGAACAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCC 
GGCGGCAAGCCGGTGGAGACCCTGTCGCTGAACTTCACCAAGATCAAGTGGGAGCTGACCGCGCAGAAGGAC 
GACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCCAACCAGTTGGTCAAGTGA