ViewGene
Locus Name:
GeneID:
Location:

GeneID:4293
TrivialName: PA14_08090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08090
PAO1 Ortholog Locus:PA0623
Sequence Length:504
Protein Length:167
Start: 695257
Stop: 695760
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04012.1|AE004498_7 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 167/167 (100%), Positives = 167/167 (100%)
Sequence:
ATGATTCCGCAAACCCTGACCAATACCAACCTGTTCATCGACGGCGTGAGCTTCGCCGGTGACGTGCCATCC
CTGACCCTGCCCAAGCTGGCTGTGAAGACCGAGCAATACCGTGCCGGCGGCATGGATGCGCCGGTATCCATC
GACATGGGCCTGGAGGCGATGGAGGCCAAGTTCTCCACCAACGGTGCCCGCCGAGAAGCACTGAATTTCTTC
GGCCTGGCCGACCAGAGCGCTTTCAATGGCGTGTTCCGCGGCTCCTTCAAGGGCCAGAAGGGCGCCAGCGTG
CCAGTGGTGGCTACCCTGCGCGGCCTGCTCAAGGAGGTCGACCCGGGCGACTGGAAGGCCGGCGAGAAAGCC
GAGTTCAAGTACGCCGTTGCGGTCAGCTACTACAAGCTGGAAGTCGATGGCCGCGAGGTCTACGAGATCGAT
CCGGTCAACGGTGTCCGCGCGATCAACGGTGTCGACCAGTTGGCCGGCATGCGCAACGACCTCGGCCTGTAA
Translation:
MIPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGLEAMEAKFSTNGARREALNFF
GLADQSAFNGVFRGSFKGQKGASVPVVATLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEID
PVNGVRAINGVDQLAGMRNDLGL*
AnnotationID:4299GeneID:4293
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:52
Gene Name:
Confidence Code:3
GeneProduct:putative phage tail tube protein
Cell Localization:()
Synonyms:gpFII
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04985
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56873.1| (AE016868) major tail tube protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 169

 Score =  235 bits (600), Expect = 7e-62
 Identities = 115/167 (68%), Positives = 136/167 (81%)

>gb|AAN68668.1|AE016496_2 (AE016785) pyocin R2_PP, tail tube protein [Pseudomonas putida
           KT2440]
          Length = 169

 Score =  233 bits (594), Expect = 3e-61
 Identities = 112/166 (67%), Positives = 132/166 (79%)






 
Structural Features:
pfam04985, Phage tail tube protein FII.
CD-Length = 170 residues, 100.0% aligned
Score =  239 bits (611), Expect = 1e-64
Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 3/170 (1%)






   
Genomic Context:






   
Comment:
other possible gene name: FIIR2


















    ReferenceID:8587




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25730




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34597




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4923_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4293
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6605
                           PA0623_tr
                           translation of PA0623
                           167
                           99.99
                           99.99
                           0
                           850.0
     

     
     
178420
                           gb|AAG04012.1|AE004498_7
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           167
                           99.99
                           99.99
                           0
                           850.0
     

     
     
178421
                           dbj|BAA83161.1|
                           (AB030825) PRF18~similar to FII genes of P2 and phiCTX, and PS17: tail tube [Pseudomonas aeruginosa]
                           168
                           99.40
                           99.40
                           1
                           850.0
     

     
     
178422
                           gb|AAO56873.1|
                           (AE016868) major tail tube protein [Pseudomonas syringae pv. tomato str. DC3000]
                           169
                           68.04
                           80.47
                           2
                           600.0
     

     
     
178423
                           gb|AAN68668.1|AE016496_2
                           (AE016785) pyocin R2_PP, tail tube protein [Pseudomonas putida KT2440]
                           169
                           66.27
                           78.10
                           2
                           594.0
     

     






      

          
GC ORFID: 47295How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0623Glimmer Score: 

          
Start: 6496600Stop: 6497103

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0623 translation of PA0623Homolog Bit Score 332.0

          
Other Homologs:  t_PA0623 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCCGCAAACCCTGACCAATACCAACCTGTTCATCGACGGCGTGAGCTTCGCCGGTGACGTGCCATCC 
CTGACCCTGCCCAAGCTGGCTGTGAAGACCGAGCAATACCGTGCCGGCGGCATGGATGCGCCGGTATCCATC 
GACATGGGCCTGGAGGCGATGGAGGCCAAGTTCTCCACCAACGGTGCCCGCCGAGAAGCACTGAATTTCTTC 
GGCCTGGCCGACCAGAGCGCTTTCAATGGCGTGTTCCGCGGCTCCTTCAAGGGCCAGAAGGGCGCCAGCGTG 
CCAGTGGTGGCTACCCTGCGCGGCCTGCTCAAGGAGGTCGACCCGGGCGACTGGAAGGCCGGCGAGAAAGCC 
GAGTTCAAGTACGCCGTTGCGGTCAGCTACTACAAGCTGGAAGTCGATGGCCGCGAGGTCTACGAGATCGAT 
CCGGTCAACGGTGTCCGCGCGATCAACGGTGTCGACCAGTTGGCCGGCATGCGCAACGACCTCGGCCTGTAA