ViewGene
Locus Name:
GeneID:
Location:

GeneID:4290
TrivialName: PA14_45810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45810
PAO1 Ortholog Locus:PA1442
Sequence Length:522
Protein Length:173
Start: 4072206
Stop: 4071685
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04831.1|AE004574_2 (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/173 (100%), Positives = 173/173 (100%)
Sequence:
ATGGCTAAGAAAGAGGCGACACCCGCCGACGCGGGGGCTCCGAGCGGCGGCAAGAGCAAGCTGAAGCTGATC
CTGCTGATCGTGGTCGGCCTGCTGCTGGCGATCGGCCTGTCGGTGGGCGGCACCTGGTTCTTCCTCAGCAAG
TCGCTGAAGGCCGAGAAGACCGAGGAAGTCGCCAGCGAGGCGGCGAAGCCGGGCAAGCAGCCGGCGCTCTAC
GAGATCCTGGCGCCTGCCTTCGTCGTCAACTTCAACCAGAACGGCCGGCAGCGCTACATGCAGGTCGGCGTC
GCGTTGATGGGGCGCGACAAGGCGCAGATGGACGCATTGCGCGAGCACATGCCGCTGGTTCGCAATAAACTG
GTGATGCTGTTCTCGAGTCAGAGTTTCGACTCGCTGGTGACTCCGGTGGGCAAGGAAATGCTCCGCCAGCAG
GCGACCGCCGGATTGCAGGAACTGGCCAAGAAGGAAACCGGCCAACTGGCTATCGAACAAGTGTTGTTCACC
AATTTCGTGCTGCAGTAG
Translation:
MAKKEATPADAGAPSGGKSKLKLILLIVVGLLLAIGLSVGGTWFFLSKSLKAEKTEEVASEAAKPGKQPALY
EILAPAFVVNFNQNGRQRYMQVGVALMGRDKAQMDALREHMPLVRNKLVMLFSSQSFDSLVTPVGKEMLRQQ
ATAGLQELAKKETGQLAIEQVLFTNFVLQ*
AnnotationID:4296GeneID:4290
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:15
Gene Name:
Confidence Code:3
GeneProduct:putative flagellar protein FliL
Cell Localization:()
Synonyms:fliL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1580,pfam03748
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69937.1|AE016632_8 (AE016790) flagellar protein FliL [Pseudomonas putida KT2440]
          Length = 165

 Score =  191 bits (486), Expect = 1e-48
 Identities = 107/174 (61%), Positives = 128/174 (73%), Gaps = 10/174 (5%)

>gb|AAO55486.1| (AE016862) flagellar protein FliL, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 167

 Score =  187 bits (476), Expect = 2e-47
 Identities = 99/173 (57%), Positives = 127/173 (73%), Gaps = 6/173 (3%)








 
Structural Features:
COG1580, FliL, Flagellar basal body-associated protein 
[Cell motility and secretion]
CD-Length = 159 residues, 100.0% aligned
Score =  137 bits (347), Expect = 6e-34
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

pfam03748, FliL, Flagellar basal body-associated protein FliL
CD-Length = 151 residues, 100.0% aligned
Score =  133 bits (336), Expect = 1e-32
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25724




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37413




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4290_cdd.html


    		




 
URL:

















    ReferenceID:37989




  
Author/Investigator(s):
        Yu J, Shapiro L.





  
Title:
        Early Caulobacter crescentus genes fliL and fliM are required for flagellar gene expression and normal cell division.




  
PubMed:
        1315735


MedLine:
        




    
Source:
J Bacteriol. 1992 May;174(10):3327-38.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1315735

















    ReferenceID:37990




  
Author/Investigator(s):
        Malakooti J, Komeda Y, Matsumura P.





  
Title:
        DNA sequence analysis, gene product identification, and localization of flagellar motor components of Escherichia coli.




  
PubMed:
        2651416


MedLine:
        




    
Source:
J Bacteriol. 1989 May;171(5):2728-34.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2651416









           
Homologs By Global Alignment 

           

       



     
Gene ID:4290
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6602
                           PA1442_tr
                           translation of PA1442
                           173
                           99.99
                           99.99
                           0
                           850.0
     

     
     
178343
                           gb|AAG04831.1|AE004574_2
                           (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           173
                           99.99
                           99.99
                           0
                           850.0
     

     
     
178344
                           gb|AAN69937.1|AE016632_8
                           (AE016790) flagellar protein FliL [Pseudomonas putida KT2440]
                           176
                           61.36
                           73.29
                           14
                           497.0
     

     
     
178345
                           gb|AAD56293.1|
                           (AF031418) FliL [Pseudomonas putida]
                           176
                           60.22
                           72.15
                           14
                           492.0
     

     
     
178346
                           gb|AAO55486.1|
                           (AE016862) flagellar protein FliL, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           174
                           56.89
                           73.56
                           8
                           482.0
     

     






      

          
GC ORFID: 47292How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1442Glimmer Score: 

          
Start: 881703Stop: 882224

          
Length: 522


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1442 translation of PA1442Homolog Bit Score 332.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7927 (ORF: BLASTX 189.0), t_PA1442 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTAAGAAAGAGGCGACACCCGCCGACGCGGGGGCTCCGAGCGGCGGCAAGAGCAAGCTGAAGCTGATC 
CTGCTGATCGTGGTCGGCCTGCTGCTGGCGATCGGCCTGTCGGTGGGCGGCACCTGGTTCTTCCTCAGCAAG 
TCGCTGAAGGCCGAGAAGACCGAGGAAGTCGCCAGCGAGGCGGCGAAGCCGGGCAAGCAGCCGGCGCTCTAC 
GAGATCCTGGCGCCTGCCTTCGTCGTCAACTTCAACCAGAACGGCCGGCAGCGCTACATGCAGGTCGGCGTC 
GCGTTGATGGGGCGCGACAAGGCGCAGATGGACGCATTGCGCGAGCACATGCCGCTGGTTCGCAATAAACTG 
GTGATGCTGTTCTCGAGTCAGAGTTTCGACTCGCTGGTGACTCCGGTGGGCAAGGAAATGCTCCGCCAGCAG 
GCGACCGCCGGATTGCAGGAACTGGCCAAGAAGGAAACCGGCCAACTGGCTATCGAACAAGTGTTGTTCACC 
AATTTCGTGCTGCAGTAG