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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05200.1|AE004607_6 (AE004607) probable solute-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 608/609 (99%), Positives = 608/609 (99%)
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Sequence:
ATGCGTCGCCTCTCCTTCCTGATCCTCGGCCTGGCCGTGAGCCTGCCCAGCTTCGCCGCGATTACCCAGAGC
CATGGTTATGCCCAATTCGGCACGCTCAAGTATCCGGCCAATTTCCAGCACTTCGACTGGACCAATCCCGAC
GCCCCCAAAGGCGGCACCTTGCGCCTGATGGCCTCGGGCAGCTTCGACACGCTCAACCCCTACACCCTGAAA
GGCACCAGCCCGATCGGCACCGGCGATTTCCTCCAGTACGGCGTCAATGAGCTGAACGAACCATTGATGGTG
GGCACCGGCCTGTACGACCCGTCCGGCGACGAACCAGCCTCCAGCTATGGCCTGATCGCGAAGAGCGTGGAA
TACGCGGAAAACCGCAGCTGGGTGGTATTCAACCTGCGGCCGGAAGCACGCTTCCACGACGGCAGGCCGATC
ACCGCCAGCGACGTGGCCTTTTCCTATCGCACCCTGGTCAAGCAGGGGCACCCGATGTACCGCACCTACCTG
CAGGAGGTGAAGCGGGTCGATATCCTCACCTCCCACCGGGTGCGTTTCGTCCTGCGGCGCTCCGGCAACCCG
CTGCTGATCCTGCGCCTGGGCGAGCTTCCGGTGCTGCCGCAGCATTACTGGAAGGATCGCGACTTCCGCGCC
ACCACCTTCACCGCGCCGCTGGGCAGCGGTCCCTATCGCATCGTCGAGGTCGATCCCGGGCGCCGCCTGGTG
TTCGAACGCGTGAAGGGCTGGTGGGGCGAAAAACTGCCGGTGAACCGCGGCAAATACAATTTCGACCGGGTC
GTGGTGGACTTCTACCGGGACAACGGCGTCGCCTTCGAAGCCTTCAAGGCCGGCGAGTTCGACTTCTACATC
GAGCACCAGGCGAAGAACTGGCTGAACAACTATCGCTTCCCCGCGGTTCTGCGCGGCGATGTGATCCGCACG
GAAATCCCGCACCAGATCCCCAGCCAGACCCAGGCGTTGTTCATGAACACCCGTCGCGCCGTGTTCAAGGAG
CGCGCGCTACGCCAGGCGCTGGGCGAGATGTTCGACTTCGAATGGACCAATCGCGCCCTCTTCAGCAATTCC
TACCTGCGCTCGCGCAGCTACTACCCGAACAGCGAATTCGCCGCCAGCGGCGTCCCGGAGGGCCAGGAATGG
CTGTACCTGTCGCCGTACCGCAAGCAATTGCCGGCGCAGTTGTTCAAACAGCCATTCAGCCTGCCGACCACC
GAGGGGCGCGGCATTCCCCGTGAAACCCTCAGGCATGCACTCGGTCTACTGGCCGATGCCGGCTGGAAGCTG
TCCGGCGACCGACTGCTGAATAAAAAGGGCGAACCGCTGCGCTTCGAAATCCTGCTGGTCAATCCGAGCCTG
GAGCGTATTCTCCAGCCCTATCGCGAAAACCTCGCCAGCATCGGCATCGACGCGCGCCTGCGCACCGTCGAC
CGCGCCCAATACAAGCAGCGCCTGGACCAGTTCGACTACGACATGATCCTCATGACCCTGCCGCAGACCCTC
AGTCCCGGCCTGGAACAGTGGCAGTACTTCCACTCCAGCCAGGTGAAGGTCAAGGGCAGCAAGAATTACGCG
GGAATCGCCAACCCGGTGGTCGACGCCATGCTCAACCGCCTGCTCGGCGCCCACAGCCGCGACGAACAGGTC
GCCGCCGCGCGCGCCCTGGACCGGACCTTGCTCTGGCAGTACTACAGCATTCCCAACTGGTACCTCAATTCG
CACCGTCTGGCGTACCGCAACCGCTTCGCCTTCGTCGCCACCCCGCCCTACACCCTGGGCCTGCGCGCGTGG
TGGCAGAAAAACCTGGAGACGTCCCGATGA |
Translation:
MRRLSFLILGLAVSLPSFAAITQSHGYAQFGTLKYPANFQHFDWTNPDAPKGGTLRLMASGSFDTLNPYTLK
GTSPIGTGDFLQYGVNELNEPLMVGTGLYDPSGDEPASSYGLIAKSVEYAENRSWVVFNLRPEARFHDGRPI
TASDVAFSYRTLVKQGHPMYRTYLQEVKRVDILTSHRVRFVLRRSGNPLLILRLGELPVLPQHYWKDRDFRA
TTFTAPLGSGPYRIVEVDPGRRLVFERVKGWWGEKLPVNRGKYNFDRVVVDFYRDNGVAFEAFKAGEFDFYI
EHQAKNWLNNYRFPAVLRGDVIRTEIPHQIPSQTQALFMNTRRAVFKERALRQALGEMFDFEWTNRALFSNS
YLRSRSYYPNSEFAASGVPEGQEWLYLSPYRKQLPAQLFKQPFSLPTTEGRGIPRETLRHALGLLADAGWKL
SGDRLLNKKGEPLRFEILLVNPSLERILQPYRENLASIGIDARLRTVDRAQYKQRLDQFDYDMILMTLPQTL
SPGLEQWQYFHSSQVKVKGSKNYAGIANPVVDAMLNRLLGAHSRDEQVAAARALDRTLLWQYYSIPNWYLNS
HRLAYRNRFAFVATPPYTLGLRAWWQKNLETSR* |
AnnotationID:438 | GeneID:429 |
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Modification Date/Time: |
2005-03-01 18:06:23 |
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GeneProduct: | putative solute-binding protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | putative ABC transporter, periplasmic substrate-binding protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO57185.1| (AE016869) ABC transporter, periplasmic substrate-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 609
Score = 962 bits (2487), Expect = 0.0
Identities = 462/609 (75%), Positives = 520/609 (85%)
>gb|AAN69728.1|AE016609_2 (AE016789) peptide ABC transporter, periplamic peptide-binding
protein [Pseudomonas putida KT2440]
Length = 609
Score = 943 bits (2438), Expect = 0.0
Identities = 449/609 (73%), Positives = 519/609 (85%)
>gb|AAN28968.1|AE014316_2 (AE014316) ABC transporter, periplasmic substrate-binding protein,
putative [Brucella suis 1330]
Length = 622
Score = 469 bits (1208), Expect = e-131
Identities = 251/611 (41%), Positives = 352/611 (57%), Gaps = 24/611 (3%) |
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Structural Features: | COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component
[Amino acid transport and metabolism]
CD-Length = 562 residues, 98.6% aligned
Score = 343 bits (882), Expect = 2e-95
Identities = 183/615 (29%), Positives = 258/615 (41%), Gaps = 73/615 (11%)
COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component
[Amino acid transport and metabolism]
CD-Length = 556 residues, 96.8% aligned
Score = 165 bits (419), Expect = 1e-41
Identities = 140/605 (23%), Positives = 213/605 (35%), Gaps = 80/605 (13%)
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