ViewGene

Locus Name:
GeneID:
Location:

GeneID:429
TrivialName: PA14_41110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41110
PAO1 Ortholog Locus:PA1811
Sequence Length:1830
Protein Length:609
Start: 3665234
Stop: 3667063
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05200.1|AE004607_6 (AE004607) probable solute-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 608/609 (99%), Positives = 608/609 (99%)
Sequence:
ATGCGTCGCCTCTCCTTCCTGATCCTCGGCCTGGCCGTGAGCCTGCCCAGCTTCGCCGCGATTACCCAGAGC
CATGGTTATGCCCAATTCGGCACGCTCAAGTATCCGGCCAATTTCCAGCACTTCGACTGGACCAATCCCGAC
GCCCCCAAAGGCGGCACCTTGCGCCTGATGGCCTCGGGCAGCTTCGACACGCTCAACCCCTACACCCTGAAA
GGCACCAGCCCGATCGGCACCGGCGATTTCCTCCAGTACGGCGTCAATGAGCTGAACGAACCATTGATGGTG
GGCACCGGCCTGTACGACCCGTCCGGCGACGAACCAGCCTCCAGCTATGGCCTGATCGCGAAGAGCGTGGAA
TACGCGGAAAACCGCAGCTGGGTGGTATTCAACCTGCGGCCGGAAGCACGCTTCCACGACGGCAGGCCGATC
ACCGCCAGCGACGTGGCCTTTTCCTATCGCACCCTGGTCAAGCAGGGGCACCCGATGTACCGCACCTACCTG
CAGGAGGTGAAGCGGGTCGATATCCTCACCTCCCACCGGGTGCGTTTCGTCCTGCGGCGCTCCGGCAACCCG
CTGCTGATCCTGCGCCTGGGCGAGCTTCCGGTGCTGCCGCAGCATTACTGGAAGGATCGCGACTTCCGCGCC
ACCACCTTCACCGCGCCGCTGGGCAGCGGTCCCTATCGCATCGTCGAGGTCGATCCCGGGCGCCGCCTGGTG
TTCGAACGCGTGAAGGGCTGGTGGGGCGAAAAACTGCCGGTGAACCGCGGCAAATACAATTTCGACCGGGTC
GTGGTGGACTTCTACCGGGACAACGGCGTCGCCTTCGAAGCCTTCAAGGCCGGCGAGTTCGACTTCTACATC
GAGCACCAGGCGAAGAACTGGCTGAACAACTATCGCTTCCCCGCGGTTCTGCGCGGCGATGTGATCCGCACG
GAAATCCCGCACCAGATCCCCAGCCAGACCCAGGCGTTGTTCATGAACACCCGTCGCGCCGTGTTCAAGGAG
CGCGCGCTACGCCAGGCGCTGGGCGAGATGTTCGACTTCGAATGGACCAATCGCGCCCTCTTCAGCAATTCC
TACCTGCGCTCGCGCAGCTACTACCCGAACAGCGAATTCGCCGCCAGCGGCGTCCCGGAGGGCCAGGAATGG
CTGTACCTGTCGCCGTACCGCAAGCAATTGCCGGCGCAGTTGTTCAAACAGCCATTCAGCCTGCCGACCACC
GAGGGGCGCGGCATTCCCCGTGAAACCCTCAGGCATGCACTCGGTCTACTGGCCGATGCCGGCTGGAAGCTG
TCCGGCGACCGACTGCTGAATAAAAAGGGCGAACCGCTGCGCTTCGAAATCCTGCTGGTCAATCCGAGCCTG
GAGCGTATTCTCCAGCCCTATCGCGAAAACCTCGCCAGCATCGGCATCGACGCGCGCCTGCGCACCGTCGAC
CGCGCCCAATACAAGCAGCGCCTGGACCAGTTCGACTACGACATGATCCTCATGACCCTGCCGCAGACCCTC
AGTCCCGGCCTGGAACAGTGGCAGTACTTCCACTCCAGCCAGGTGAAGGTCAAGGGCAGCAAGAATTACGCG
GGAATCGCCAACCCGGTGGTCGACGCCATGCTCAACCGCCTGCTCGGCGCCCACAGCCGCGACGAACAGGTC
GCCGCCGCGCGCGCCCTGGACCGGACCTTGCTCTGGCAGTACTACAGCATTCCCAACTGGTACCTCAATTCG
CACCGTCTGGCGTACCGCAACCGCTTCGCCTTCGTCGCCACCCCGCCCTACACCCTGGGCCTGCGCGCGTGG
TGGCAGAAAAACCTGGAGACGTCCCGATGA
Translation:
MRRLSFLILGLAVSLPSFAAITQSHGYAQFGTLKYPANFQHFDWTNPDAPKGGTLRLMASGSFDTLNPYTLK
GTSPIGTGDFLQYGVNELNEPLMVGTGLYDPSGDEPASSYGLIAKSVEYAENRSWVVFNLRPEARFHDGRPI
TASDVAFSYRTLVKQGHPMYRTYLQEVKRVDILTSHRVRFVLRRSGNPLLILRLGELPVLPQHYWKDRDFRA
TTFTAPLGSGPYRIVEVDPGRRLVFERVKGWWGEKLPVNRGKYNFDRVVVDFYRDNGVAFEAFKAGEFDFYI
EHQAKNWLNNYRFPAVLRGDVIRTEIPHQIPSQTQALFMNTRRAVFKERALRQALGEMFDFEWTNRALFSNS
YLRSRSYYPNSEFAASGVPEGQEWLYLSPYRKQLPAQLFKQPFSLPTTEGRGIPRETLRHALGLLADAGWKL
SGDRLLNKKGEPLRFEILLVNPSLERILQPYRENLASIGIDARLRTVDRAQYKQRLDQFDYDMILMTLPQTL
SPGLEQWQYFHSSQVKVKGSKNYAGIANPVVDAMLNRLLGAHSRDEQVAAARALDRTLLWQYYSIPNWYLNS
HRLAYRNRFAFVATPPYTLGLRAWWQKNLETSR*
AnnotationID:438GeneID:429
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 18:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative solute-binding protein
Cell Localization:()
Synonyms:PA1811
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC transporter, periplasmic substrate-binding protein
Functional Category Confidence Code:5
COGs:COG4166,COG0747
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57185.1| (AE016869) ABC transporter, periplasmic substrate-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 609

 Score =  962 bits (2487), Expect = 0.0
 Identities = 462/609 (75%), Positives = 520/609 (85%)

>gb|AAN69728.1|AE016609_2 (AE016789) peptide ABC transporter, periplamic peptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 609

 Score =  943 bits (2438), Expect = 0.0
 Identities = 449/609 (73%), Positives = 519/609 (85%)

>gb|AAN28968.1|AE014316_2 (AE014316) ABC transporter, periplasmic substrate-binding protein,
           putative [Brucella suis 1330]
          Length = 622

 Score =  469 bits (1208), Expect = e-131
 Identities = 251/611 (41%), Positives = 352/611 (57%), Gaps = 24/611 (3%)
Structural Features:
COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component 
[Amino acid transport and metabolism] 
CD-Length = 562 residues,  98.6% aligned
Score =  343 bits (882), Expect = 2e-95
Identities = 183/615 (29%), Positives = 258/615 (41%), Gaps = 73/615 (11%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  96.8% aligned
Score =  165 bits (419), Expect = 1e-41
Identities = 140/605 (23%), Positives = 213/605 (35%), Gaps = 80/605 (13%)
Genomic Context:
Comment:
ReferenceID:861
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18003
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37102
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:429_cdd.html
URL:
Homologs By Global Alignment
Gene ID:429

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
719 PA1811_tr translation of PA1811 609 99.83 99.83 0 3222.0
32303 gb|AAG05200.1|AE004607_6 (AE004607) probable solute-binding protein [Pseudomonas aeruginosa PAO1] 609 99.83 99.83 0 3222.0
32304 gb|AAO57185.1| (AE016869) ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 609 75.86 85.38 0 2487.0
32305 gb|AAN69728.1|AE016609_2 (AE016789) peptide ABC transporter, periplamic peptide-binding protein [Pseudomonas putida KT2440] 609 73.72 85.22 0 2438.0
721 PA2058_tr translation of PA2058 623 43.17 57.78 35 1285.0
GC ORFID: 43431How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1811Glimmer Score:
Start: 1288675Stop: 1286846
Length: 1830
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1811 translation of PA1811Homolog Bit Score 1245.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene634 (ORF: BLASTX 964.0), psyr_15may02_Scaffold1_revised_gene635 (ORF: BLASTX 523.0), t_PA1810 (ORF: BLASTX 520.0), t_PA2058 (ORF: BLASTX 497.0), t_PA1811 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCGCCTCTCCTTCCTGATCCTCGGCCTGGCCGTGAGCCTGCCCAGCTTCGCCGCGATTACCCAGAGC
CATGGTTATGCCCAATTCGGCACGCTCAAGTATCCGGCCAATTTCCAGCACTTCGACTGGACCAATCCCGAC
GCCCCCAAAGGCGGCACCTTGCGCCTGATGGCCTCGGGCAGCTTCGACACGCTCAACCCCTACACCCTGAAA
GGCACCAGCCCGATCGGCACCGGCGATTTCCTCCAGTACGGCGTCAATGAGCTGAACGAACCATTGATGGTG
GGCACCGGCCTGTACGACCCGTCCGGCGACGAACCAGCCTCCAGCTATGGCCTGATCGCGAAGAGCGTGGAA
TACGCGGAAAACCGCAGCTGGGTGGTATTCAACCTGCGGCCGGAAGCACGCTTCCACGACGGCAGGCCGATC
ACCGCCAGCGACGTGGCCTTTTCCTATCGCACCCTGGTCAAGCAGGGGCACCCGATGTACCGCACCTACCTG
CAGGAGGTGAAGCGGGTCGATATCCTCACCTCCCACCGGGTGCGTTTCGTCCTGCGGCGCTCCGGCAACCCG
CTGCTGATCCTGCGCCTGGGCGAGCTTCCGGTGCTGCCGCAGCATTACTGGAAGGATCGCGACTTCCGCGCC
ACCACCTTCACCGCGCCGCTGGGCAGCGGTCCCTATCGCATCGTCGAGGTCGATCCCGGGCGCCGCCTGGTG
TTCGAACGCGTGAAGGGCTGGTGGGGCGAAAAACTGCCGGTGAACCGCGGCAAATACAATTTCGACCGGGTC
GTGGTGGACTTCTACCGGGACAACGGCGTCGCCTTCGAAGCCTTCAAGGCCGGCGAGTTCGACTTCTACATC
GAGCACCAGGCGAAGAACTGGCTGAACAACTATCGCTTCCCCGCGGTTCTGCGCGGCGATGTGATCCGCACG
GAAATCCCGCACCAGATCCCCAGCCAGACCCAGGCGTTGTTCATGAACACCCGTCGCGCCGTGTTCAAGGAG
CGCGCGCTACGCCAGGCGCTGGGCGAGATGTTCGACTTCGAATGGACCAATCGCGCCCTCTTCAGCAATTCC
TACCTGCGCTCGCGCAGCTACTACCCGAACAGCGAATTCGCCGCCAGCGGCGTCCCGGAGGGCCAGGAATGG
CTGTACCTGTCGCCGTACCGCAAGCAATTGCCGGCGCAGTTGTTCAAACAGCCATTCAGCCTGCCGACCACC
GAGGGGCGCGGCATTCCCCGTGAAACCCTCAGGCATGCACTCGGTCTACTGGCCGATGCCGGCTGGAAGCTG
TCCGGCGACCGACTGCTGAATAAAAAGGGCGAACCGCTGCGCTTCGAAATCCTGCTGGTCAATCCGAGCCTG
GAGCGTATTCTCCAGCCCTATCGCGAAAACCTCGCCAGCATCGGCATCGACGCGCGCCTGCGCACCGTCGAC
CGCGCCCAATACAAGCAGCGCCTGGACCAGTTCGACTACGACATGATCCTCATGACCCTGCCGCAGACCCTC
AGTCCCGGCCTGGAACAGTGGCAGTACTTCCACTCCAGCCAGGTGAAGGTCAAGGGCAGCAAGAATTACGCG
GGAATCGCCAACCCGGTGGTCGACGCCATGCTCAACCGCCTGCTCGGCGCCCACAGCCGCGACGAACAGGTC
GCCGCCGCGCGCGCCCTGGACCGGACCTTGCTCTGGCAGTACTACAGCATTCCCAACTGGTACCTCAATTCG
CACCGTCTGGCGTACCGCAACCGCTTCGCCTTCGTCGCCACCCCGCCCTACACCCTGGGCCTGCGCGCGTGG
TGGCAGAAAAACCTGGAGACGTCCCGATGA