ViewGene

Locus Name:
GeneID:
Location:

GeneID:4289
TrivialName: PA14_12750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12750
PAO1 Ortholog Locus:PA3951
Sequence Length:504
Protein Length:167
Start: 1092477
Stop: 1092980
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07338.1|AE004813_5 (AE004813) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/167 (100%), Positives = 167/167 (100%)
Sequence:
TTGAGTCGTCCCGAGTCGCCCGCGGCGAAGAAGATCGCTGTCTTCGCCGATGTGCAGAACCTCTACTACACC
GTGCGCCAGGCCTACGGCTGCCATCTCAACTACGCCGCCCTGTGGGCAGACATCGCTCGCGGCGGGAGCATC
GTCGAGGCCTATGCCTACGCCATCGACCGCGGCGACCCGCGTCAGCAACAGTTCCAGCAGATTCTGCGCAAC
CTCGGTTTCACGGTGAAGCTGAAGCCCTACATCCAGCGTGCCGACGGCTCGGCCAAGGGTGACTGGGATGTC
GGCATCACCATCGACGTACTGGATGCCGCGCCGCGGGTGGATGAAGTGGTGCTGCTCTCCGGTGACGGCGAC
TTCGATCTGCTGCTGGAGAAGGTCATCCGCGCCCACGGCGTCGTGGCTACGGCCTACGGGGTGCCTGGCCTG
ACCGCCAACGCGCTGATCCGAGCGGCGTCGCGCTACGTGCCGATCGAGGGCGGACTGCTGCTCAAGGGCTGA
Translation:
MSRPESPAAKKIAVFADVQNLYYTVRQAYGCHLNYAALWADIARGGSIVEAYAYAIDRGDPRQQQFQQILRN
LGFTVKLKPYIQRADGSAKGDWDVGITIDVLDAAPRVDEVVLLSGDGDFDLLLEKVIRAHGVVATAYGVPGL
TANALIRAASRYVPIEGGLLLKG*
AnnotationID:4295GeneID:4289
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 14:02:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3951
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01936, COG1432
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|25850 pfam01936, DUF88, Protein of unknown function DUF88.
This highly conserved bacterial protein has no known function. The
alignment contains many conserved aspartates, suggesting an enzymatic
function e.g. endonuclease or glycosyl hydrolase
Genomic Context:
Comment:
ReferenceID:15060
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25722
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4289

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6601 PA3951_tr translation of PA3951 167 99.99 99.99 0 853.0
178334 gb|AAG07338.1|AE004813_5 (AE004813) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 167 99.40 99.99 0 851.0
178335 gb|AAO58112.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 167 78.44 86.82 9 693.0
178336 gb|AAN70339.1|AE016675_9 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 167 75.44 84.43 8 661.0
178337 gb|AAN56483.1|AE015785_6 (AE015785) conserved hypothetical protein [Shewanella oneidensis MR-1] 167 58.08 70.65 10 495.0
GC ORFID: 47291How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3951Glimmer Score:
Start: 3861461Stop: 3860958
Length: 504
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3951 translation of PA3951Homolog Bit Score 333.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5379 (ORF: BLASTX 270.0), t_PA3951 (ORF: GLIMMER)
GC ORF Sequence
TTGAGTCGTCCCGAGTCGCCCGCGGCGAAGAAGATCGCTGTCTTCGCCGATGTGCAGAACCTCTACTACACC
GTGCGCCAGGCCTACGGCTGCCATCTCAACTACGCCGCCCTGTGGGCAGACATCGCTCGCGGCGGGAGCATC
GTCGAGGCCTATGCCTACGCCATCGACCGCGGCGACCCGCGTCAGCAACAGTTCCAGCAGATTCTGCGCAAC
CTCGGTTTCACGGTGAAGCTGAAGCCCTACATCCAGCGTGCCGACGGCTCGGCCAAGGGTGACTGGGATGTC
GGCATCACCATCGACGTACTGGATGCCGCGCCGCGGGTGGATGAAGTGGTGCTGCTCTCCGGTGACGGCGAC
TTCGATCTGCTGCTGGAGAAGGTCATCCGCGCCCACGGCGTCGTGGCTACGGCCTACGGGGTGCCTGGCCTG
ACCGCCAACGCGCTGATCCGAGCGGCGTCGCGCTACGTGCCGATCGAGGGCGGACTGCTGCTCAAGGGCTGA