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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06798.1|AE004762_4 (AE004762) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 169/171 (98%), Positives = 170/171 (99%)
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Sequence:
GTGGATGCGCCGTTGGCGGAGCAGGATCTCAAGGCACTGTTTCTCAGGCATGCCCGGCAGTTGCAGTCGTAT
CTGTTGCGCAAGACCCGCGATCCGCACCTGGCGGCGGACCTGGCGCAGGAAAGCTTCCTGCGCCTGGCCGAG
CAGCGGCACAAGGAGCCGATCGAGCATGTCGACGCCTATCTCTACCGCACCGCGCACAACCTCACCATCGAC
CATTACCGGCAGGAACGGCGGCGCCGCACCGAGACCCGCCCCAACGACGACCTCGCCGGGTTCGTCGCCGAC
CAGCCCGGCCCCGAGGAGTCCGCGGTGGATGCCGATGCGCTTGCCCGCCTGCGCGAGATAGTCGCCGAACTG
CCGCCGCGCACCCGTGAGATCTTCCGTCTCAACCGTCTGGAGGGGCTGACCCATGCCGAGGTGGCGAGACGC
CTGGAAATCTCCGATAGCTCGGTGCAGAAGCACCTGGCCCGCGCCCTGGCCCATGTGATGCAGGCACTCGAG
GATTCCCGCTGA |
Translation:
MDAPLAEQDLKALFLRHARQLQSYLLRKTRDPHLAADLAQESFLRLAEQRHKEPIEHVDAYLYRTAHNLTID
HYRQERRRRTETRPNDDLAGFVADQPGPEESAVDADALARLREIVAELPPRTREIFRLNRLEGLTHAEVARR
LEISDSSVQKHLARALAHVMQALEDSR* |
AnnotationID:4294 | GeneID:4288 |
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Modification Date/Time: |
2005-04-18 12:12:09 |
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GeneProduct: | putative sigma-70 factor, ECF subfamily |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | putative DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN67805.1|AE016411_10 (AE016782) RNA polymerase sigma-70 factor, ECF
subfamily/transmembrane sensor protein, putative
[Pseudomonas putida KT2440]
Length = 374
Score = 96.7 bits (239), Expect = 5e-20
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
>emb|CAE35633.1| (BX640448) ECF-family sigma factor [Bordetella bronchiseptica]
Length = 177
Score = 90.1 bits (222), Expect = 5e-18
Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 4/161 (2%) |
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Structural Features: | pfam04542, Sigma70_r2, Sigma-70 region 2.
CD-Length = 71 residues, 100.0% aligned
Score = 46.4 bits (110), Expect = 2e-06
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit,
sigma24 homolog [Transcription]
CD-Length = 182 residues, 91.8% aligned
Score = 93.6 bits (232), Expect = 1e-20
Identities = 58/167 (34%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
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