ViewGene
Locus Name:
GeneID:
Location:

GeneID:4287
TrivialName: PA14_44840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44840
PAO1 Ortholog Locus:PA1516
Sequence Length:516
Protein Length:171
Start: 3996050
Stop: 3996565
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04905.1|AE004580_5 (AE004580) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 171/171 (100%)
Sequence:
ATGAGCCGTTTCCAGACCCTGACCCCCGCCTCGCTGTCCCGCGAGGCCTTCGTCGAAGCCTTCGCCGACATC
TACGAACACTCCCCCTGGGTCGCCGAGAAGGCCTATGACCTGGGTATCGACGACAGCCTCAACGATATCGAG
GGCCTGCACCAGCGCATGGCCGACATTCTCCTGTCGGCAAGCCGCGAGGCCCAGCTGGCGCTGATCAACGCC
CACCCGGACCTCGCCGGCAAGGCAGCGATCCGTGGCGAACTGACCGCCTCCAGCACCTCCGAGCAGGCCGGC
GCCGGGATTCACGAATGCAGCGCCGAGGAGTTCGCCCGCTTCACCGAACTCAACGACGCCTACAAGGCCAGG
TTCGGCTTCCCCTTCATCAAGGCGGTGAAGGGCAGCAACCGCCATCAGATCCTGGCGGCCTTCGAGGAACGC
ATCCAGCACTCCGCCGACGAGGAGTTCGCTACCGCGCTGGCCGAGATCAACAAGATCGCCCTGTTCCGCCTG
CAGCAGCTCTGA
Translation:
MSRFQTLTPASLSREAFVEAFADIYEHSPWVAEKAYDLGIDDSLNDIEGLHQRMADILLSASREAQLALINA
HPDLAGKAAIRGELTASSTSEQAGAGIHECSAEEFARFTELNDAYKARFGFPFIKAVKGSNRHQILAAFEER
IQHSADEEFATALAEINKIALFRLQQL*
AnnotationID:4293GeneID:4287
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1516
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8575




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37287




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4287_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4287
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6599
                           PA1516_tr
                           translation of PA1516
                           171
                           99.41
                           99.99
                           0
                           855.0
     

     
     
178316
                           gb|AAG04905.1|AE004580_5
                           (AE004580) hypothetical protein PA1516 [Pseudomonas aeruginosa PAO1]
                           171
                           99.41
                           99.99
                           0
                           855.0
     

     
     
178317
                           gb|AAN69867.1|AE016626_2
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           171
                           77.19
                           87.13
                           0
                           664.0
     

     
     
178318
                           gb|AAO57136.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           66.47
                           79.54
                           5
                           603.0
     

     
     
178319
                           gb|AAL43316.1|
                           (AE009181) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           175
                           46.28
                           61.14
                           14
                           399.0
     

     






      

          
GC ORFID: 47289How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1516Glimmer Score: 

          
Start: 957859Stop: 957344

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1516 translation of PA1516Homolog Bit Score 333.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene588 (ORF: BLASTX 248.0), t_PA1516 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGTTTCCAGACCCTGACCCCCGCCTCGCTGTCCCGCGAGGCCTTCGTCGAAGCCTTCGCCGACATC 
TACGAACACTCCCCCTGGGTCGCCGAGAAGGCCTATGACCTGGGTATCGACGACAGCCTCAACGATATCGAG 
GGCCTGCACCAGCGCATGGCCGACATTCTCCTGTCGGCAAGCCGCGAGGCCCAGCTGGCGCTGATCAACGCC 
CACCCGGACCTCGCCGGCAAGGCAGCGATCCGTGGCGAACTGACCGCCTCCAGCACCTCCGAGCAGGCCGGC 
GCCGGGATTCACGAATGCAGCGCCGAGGAGTTCGCCCGCTTCACCGAACTCAACGACGCCTACAAGGCCAGG 
TTCGGCTTCCCCTTCATCAAGGCGGTGAAGGGCAGCAACCGCCATCAGATCCTGGCGGCCTTCGAGGAACGC 
ATCCAGCACTCCGCCGACGAGGAGTTCGCTACCGCGCTGGCCGAGATCAACAAGATCGCCCTGTTCCGCCTG 
CAGCAGCTCTGA