ViewGene
Locus Name:
GeneID:
Location:

GeneID:4286
TrivialName: PA14_46480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46480
PAO1 Ortholog Locus:PA1374
Sequence Length:507
Protein Length:168
Start: 4137002
Stop: 4136496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04763.1|AE004567_2 (AE004567) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/168 (99%), Positives = 167/168 (99%)
Sequence:
ATGCAACGCAAGACCTTCGCCGATGCCGAATGCCCCATCGCCCGCAGCCTGGAACGGGTCGGCGAATGGTGG
AGCATCCTGATCATGCGCGATGCGCTACAGGGCCTGCGCCGCTTCGACGAATTTTCCCGCAGCCTGGATATC
GCGCCGAACATGCTCACCCGGCGCCTGAACGCGCTGGTGGAGGCGGGCCTGCTCGAACGCCAGCCCTACAGC
CAGCGCCCGCTGCGCTATCAGTACGTGCCCACGGCCAAGGGCGAGGATTTTCGCGTCGTGCTCATGGCTTTC
GTCGCCTGGGGCAATCGCCACTACGCAGAGGAAGGGCAGAGGGTGCAGCTCGTCGAGCGAACAAGCGGGCGG
CCGGTGCGCTCGTTCATGGCGGCTCTCGCCGATGGCCGAACGGTACCGCTGGAGCAATGCACCGTGCAGGCC
GGGCCTGCCGCCAGCGAGGAAATGCGCCAGCGCCTGGCGGCCATGCCGGAGCGGAGCGAGCTACCGGCTCGA
TGA
Translation:
MQRKTFADAECPIARSLERVGEWWSILIMRDALQGLRRFDEFSRSLDIAPNMLTRRLNALVEAGLLERQPYS
QRPLRYQYVPTAKGEDFRVVLMAFVAWGNRHYAEEGQRVQLVERTSGRPVRSFMAALADGRTVPLEQCTVQA
GPAASEEMRQRLAAMPERSELPAR*
AnnotationID:4292GeneID:4286
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1374
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1733,pfam01638
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE36572.1| (BX640426) putative transcriptional regulator [Bordetella
           parapertussis]
          Length = 142

 Score =  115 bits (289), Expect = 8e-26
 Identities = 63/134 (47%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

>dbj|BAC50374.1| (AP005953) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 156

 Score =  108 bits (271), Expect = 1e-23
 Identities = 61/149 (40%), Positives = 86/149 (57%), Gaps = 3/149 (2%)








 
Structural Features:
COG1733, COG1733, Predicted transcriptional regulators [Transcription]
CD-Length = 120 residues, 100.0% aligned
Score =  108 bits (271), Expect = 4e-25
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

pfam01638, DUF24, Transcriptional regulator. 
CD-Length = 91 residues,  93.4% aligned
Score = 68.3 bits (167), Expect = 4e-13
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8573




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25715




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37397




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4286_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4286
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6598
                           PA1374_tr
                           translation of PA1374
                           168
                           99.40
                           99.40
                           0
                           854.0
     

     
     
178306
                           gb|AAG04763.1|AE004567_2
                           (AE004567) hypothetical protein PA1374 [Pseudomonas aeruginosa PAO1]
                           168
                           99.40
                           99.40
                           0
                           854.0
     

     
     
178308
                           dbj|BAC47795.1|
                           (AP005944) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           173
                           46.24
                           64.16
                           7
                           396.0
     

     
     
178307
                           dbj|BAB49684.1|
                           (AP003000) hypothetical protein [Mesorhizobium loti]
                           182
                           46.15
                           62.08
                           14
                           431.0
     

     
     
178311
                           emb|CAE32827.1|
                           (BX640444) putative transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           171
                           39.18
                           54.38
                           26
                           294.0
     

     






      

          
GC ORFID: 47288How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1374Glimmer Score: 

          
Start: 816907Stop: 817413

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1374 translation of PA1374Homolog Bit Score 333.0

          
Other Homologs:  t_PA1374 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGCAAGACCTTCGCCGATGCCGAATGCCCCATCGCCCGCAGCCTGGAACGGGTCGGCGAATGGTGG 
AGCATCCTGATCATGCGCGATGCGCTACAGGGCCTGCGCCGCTTCGACGAATTTTCCCGCAGCCTGGATATC 
GCGCCGAACATGCTCACCCGGCGCCTGAACGCGCTGGTGGAGGCGGGCCTGCTCGAACGCCAGCCCTACAGC 
CAGCGCCCGCTGCGCTATCAGTACGTGCCCACGGCCAAGGGCGAGGATTTTCGCGTCGTGCTCATGGCTTTC 
GTCGCCTGGGGCAATCGCCACTACGCAGAGGAAGGGCAGAGGGTGCAGCTCGTCGAGCGAACAAGCGGGCGG 
CCGGTGCGCTCGTTCATGGCGGCTCTCGCCGATGGCCGAACGGTACCGCTGGAGCAATGCACCGTGCAGGCC 
GGGCCTGCCGCCAGCGAGGAAATGCGCCAGCGCCTGGCGGCCATGCCGGAGCGGAGCGAGCTACCGGCTCGA 
TGA