ViewGene
Locus Name:
GeneID:
Location:

GeneID:4285
TrivialName: PA14_51710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51710
PAO1 Ortholog Locus:PA0973
Sequence Length:507
Protein Length:168
Start: 4594135
Stop: 4593629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04362.1|AE004530_15 (AE004530) Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGGAAATGCTGAAATTCGGCAAATTTGCTGCGCTGGCTCTGGCCATGGCTGTGGCTGTGGGTTGCTCCTCC
AAGGGCGGCGATGCTTCCGGTGAAGGTGCCAATGGCGGCGTCGACCCGAACGCAGGCTATGGCGCCAACAGC
GGTGCCGTTGACGGCAGCCTGAGCGACGAAGCCGCTCTGCGTGCGATCACCACCTTCTACTTCGAGTACGAC
AGCTCCGACCTGAAGCCGGAAGCCATGCGCGCTCTGGACGTACACGCGAAAGACCTGAAAGGCAGCGGTCAG
CGCGTAGTGCTGGAAGGCCACACCGACGAACGTGGCACCCGCGAGTACAACATGGCTCTGGGCGAGCGTCGT
GCCAAGGCCGTTCAGCGCTACCTGGTGCTGCAGGGCGTTTCGCCGGCCCAGCTGGAACTGGTTTCCTACGGT
AAAGAGCGTCCGGTCGCCACCGGCCACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTCGAGCTGAAGAAG
TAA
Translation:
MEMLKFGKFAALALAMAVAVGCSSKGGDASGEGANGGVDPNAGYGANSGAVDGSLSDEAALRAITTFYFEYD
SSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG
KERPVATGHDEQSWAQNRRVELKK*
AnnotationID:4291GeneID:4285
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:10
Gene Name:oprL
Confidence Code:1
GeneProduct:Peptidoglycan associated lipoprotein OprL precursor
Cell Localization:(6) Outer membrane protein
Synonyms:PA0973, pal, excC 
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885, pfam00691
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated 
(lipo)proteins [Cell envelope biogenesis, outer membrane]
      CD-Length = 190 residues,  96.8% aligned
      Score =  133 bits (335), Expect = 1e-32
pfam00691, OmpA, OmpA fa






   
Genomic Context:
b0739-b0741 (Ecoli) 






   
Comment:


















    ReferenceID:8571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25713




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32072




  
Author/Investigator(s):
        Lim A Jr, De Vos D, Brauns M, Mossialos D, Gaballa A, Qing D, Cornelis P.






  
Title:
        Molecular and immunological characterization of OprL, the 18 kDa outer-membrane peptidoglycan-associated lipoprotein (PAL) of Pseudomonas aeruginosa.





  
PubMed:
        97312009 


MedLine:
        




    
Source:
Microbiology. 1997 May;143 ( Pt 5):1709-16.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4285
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6597
                           PA0973_tr
                           translation of PA0973
                           168
                           99.99
                           99.99
                           0
                           854.0
     

     
     
178245
                           gb|AAG04362.1|AE004530_15
                           (AE004530) Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           854.0
     

     
     
178246
                           emb|CAA90573.1|
                           (Z50191) outer membrane protein [Pseudomonas aeruginosa]
                           168
                           99.40
                           99.40
                           0
                           848.0
     

     
     
178247
                           gb|AAN66847.1|AE016313_6
                           (AE016778) peptidoglycan-associated lipoprotein OprL [Pseudomonas putida KT2440]
                           168
                           91.66
                           96.42
                           2
                           774.0
     

     
     
178248
                           emb|CAA52294.1|
                           (X74218) OprL protein [Pseudomonas putida]
                           168
                           91.66
                           96.42
                           2
                           774.0
     

     






      

          
GC ORFID: 47287How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0973Glimmer Score: 

          
Start: 359772Stop: 360278

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0973 translation of PA0973Homolog Bit Score 333.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4694 (ORF: BLASTX 298.0), t_PA0973 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAATGCTGAAATTCGGCAAATTTGCTGCGCTGGCTCTGGCCATGGCTGTGGCTGTGGGTTGCTCCTCC 
AAGGGCGGCGATGCTTCCGGTGAAGGTGCCAATGGCGGCGTCGACCCGAACGCAGGCTATGGCGCCAACAGC 
GGTGCCGTTGACGGCAGCCTGAGCGACGAAGCCGCTCTGCGTGCGATCACCACCTTCTACTTCGAGTACGAC 
AGCTCCGACCTGAAGCCGGAAGCCATGCGCGCTCTGGACGTACACGCGAAAGACCTGAAAGGCAGCGGTCAG 
CGCGTAGTGCTGGAAGGCCACACCGACGAACGTGGCACCCGCGAGTACAACATGGCTCTGGGCGAGCGTCGT 
GCCAAGGCCGTTCAGCGCTACCTGGTGCTGCAGGGCGTTTCGCCGGCCCAGCTGGAACTGGTTTCCTACGGT 
AAAGAGCGTCCGGTCGCCACCGGCCACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTCGAGCTGAAGAAG 
TAA