ViewGene
Locus Name:
GeneID:
Location:

GeneID:4284
TrivialName: PA14_01010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01010
PAO1 Ortholog Locus:PA0083
Sequence Length:519
Protein Length:172
Start: 98900
Stop: 99418
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03473.1|AE004447_6 (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGGGAAGCACTACCAGCAGTCAGAAGTTCATCGCCAGGAACCGGGCGCCACGCGTGCAGATCGAGTACGAC
GTGGAGCTGTACGGTGCCGAGAAGAAGGTCCAGTTGCCCTTCGTCATGGGCGTCATGGCCGACCTCGCCGGC
AAGCCCGCCGAACCCCAGGCGGCGGTCGCCGACCGCAAGTTCCTGGAGATCGACGTGGACAACTTCGATGCC
CGGCTGAAGGCGATGAAGCCGCGGGTGGCCTTCAACGTACCGAACGTGCTGACCGGCGAAGGCAACCTGAGC
CTGGACATCACCTTCGAGAGCATGGACGACTTCAGCCCCGCCGCGGTGGCGCGCAAGGTCGATTCGCTGAAC
AAGCTGCTTGAGGCGCGTACCCAGCTGGCCAACCTGCTGACCTACATGGATGGCAAGACCGGCGCCGAGGAA
ATGATCATGAAGGCGATCAAGGACCCGGCCCTGCTTCAGGCCCTGGCCAGCGCGCCGAAGCCCAAAGACGAC
GAGCCGCAGGCGTAA
Translation:
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDVDNFDA
RLKAMKPRVAFNVPNVLTGEGNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEE
MIMKAIKDPALLQALASAPKPKDDEPQA*
AnnotationID:4290GeneID:4284
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0083
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC48205.1| (AJ320483) SciH protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 180

 Score =  238 bits (608), Expect = 9e-63
 Identities = 116/164 (70%), Positives = 138/164 (84%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33434




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4284_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4284
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6596
                           PA0083_tr
                           translation of PA0083
                           172
                           99.99
                           99.99
                           0
                           857.0
     

     
     
178226
                           gb|AAG03473.1|AE004447_6
                           (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           172
                           99.99
                           99.99
                           0
                           857.0
     

     
     
178228
                           emb|CAC92186.1|
                           (AJ414154) conserved hypothetical protein [Yersinia pestis CO92]
                           175
                           73.14
                           85.14
                           4
                           648.0
     

     
     
178227
                           gb|AAM85115.1|AE013757_7
                           (AE013757) hypothetical [Yersinia pestis KIM]
                           182
                           70.32
                           81.86
                           11
                           648.0
     

     
     
178236
                           gb|AAM38982.1|
                           (AE012065) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           173
                           69.94
                           80.92
                           5
                           597.0
     

     






      

          
GC ORFID: 47286How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0083Glimmer Score: 

          
Start: 5900239Stop: 5900757

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0083 translation of PA0083Homolog Bit Score 334.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2301 (ORF: BLASTX 134.0), t_PA0083 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGAAGCACTACCAGCAGTCAGAAGTTCATCGCCAGGAACCGGGCGCCACGCGTGCAGATCGAGTACGAC 
GTGGAGCTGTACGGTGCCGAGAAGAAGGTCCAGTTGCCCTTCGTCATGGGCGTCATGGCCGACCTCGCCGGC 
AAGCCCGCCGAACCCCAGGCGGCGGTCGCCGACCGCAAGTTCCTGGAGATCGACGTGGACAACTTCGATGCC 
CGGCTGAAGGCGATGAAGCCGCGGGTGGCCTTCAACGTACCGAACGTGCTGACCGGCGAAGGCAACCTGAGC 
CTGGACATCACCTTCGAGAGCATGGACGACTTCAGCCCCGCCGCGGTGGCGCGCAAGGTCGATTCGCTGAAC 
AAGCTGCTTGAGGCGCGTACCCAGCTGGCCAACCTGCTGACCTACATGGATGGCAAGACCGGCGCCGAGGAA 
ATGATCATGAAGGCGATCAAGGACCCGGCCCTGCTTCAGGCCCTGGCCAGCGCGCCGAAGCCCAAAGACGAC 
GAGCCGCAGGCGTAA