ViewGene
Locus Name:
GeneID:
Location:

GeneID:4283
TrivialName: PA14_73280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73280
PAO1 Ortholog Locus:PA5557
Sequence Length:537
Protein Length:178
Start: 6525951
Stop: 6525415
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08942.1|AE004967_13 (AE004967) ATP synthase delta chain [Pseudomonas aeruginosa PAO1]
Identities = 178/178 (100%), Positives = 178/178 (100%)
Sequence:
ATGGCAGAACTGACCACGTTGGCTCGTCCCTACGCAAAGGCGGCTTTCGAGTACGCCCAGGCTCATCAGCAA
CTGGCCGATTGGTCGGCTGCGCTGGGTGTGCTGGCCGCAGTGTCGCAGGACGACACCGTGCGCCAGCTGCTC
AAAGAGCCTCAGCTGACCTCTTCGGCCAAGGCCCAGAGCCTGATCGATGTGTGCGGCGACAAGCTGAATGCA
CCAGCCCAGAACTTCGTCCGGACTGTGGCTGAGAACAAGCGGCTCGAACTGCTGCCGACCATCGCTGAGATG
TACGAGCAGTTGAAGGCCGAGCAGGAAAAGTCGGTCGAGGTAGAAGTCACCAGTGCCTTCACCTTGAGCAAA
GAACAGCAGGACAAACTCGCCAAGGCTCTCAGCGCCCGGCTCAGTCGCGAAGTGCGGCTACATGCGTCGGAA
GACGCGAGCCTGATCGGCGGCGTGATCATTCGCGCCGGTGACTTGGTAATCGATGGCTCGGTGCGCGGCAAG
CTCGCGAAACTGGCCGAAGCGTTGAAATCTTGA
Translation:
MAELTTLARPYAKAAFEYAQAHQQLADWSAALGVLAAVSQDDTVRQLLKEPQLTSSAKAQSLIDVCGDKLNA
PAQNFVRTVAENKRLELLPTIAEMYEQLKAEQEKSVEVEVTSAFTLSKEQQDKLAKALSARLSREVRLHASE
DASLIGGVIIRAGDLVIDGSVRGKLAKLAEALKS*
AnnotationID:4289GeneID:4283
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:04
Gene Name:atpH
Confidence Code:2
GeneProduct:ATP synthase delta chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F1, delta subunit
Functional Category Confidence Code:5
COGs:COG0712,pfam00213
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70980.1|AE016742_9 (AE016794) ATP synthase F1, delta subunit [Pseudomonas putida
           KT2440]
          Length = 178

 Score =  268 bits (686), Expect = 9e-72
 Identities = 139/178 (78%), Positives = 158/178 (88%)

>gb|AAO59015.1| (AE016876) ATP synthase F1, delta subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 178

 Score =  265 bits (678), Expect = 7e-71
 Identities = 135/178 (75%), Positives = 160/178 (89%)

>gb|AAN57709.1|AE015907_7 (AE015907) ATP synthase F1, delta subunit [Shewanella oneidensis
           MR-1]
          Length = 177

 Score =  171 bits (432), Expect = 2e-42
 Identities = 89/178 (50%), Positives = 128/178 (71%), Gaps = 1/178 (0%)






 
Structural Features:
COG0712, AtpH, F0F1-type ATP synthase, delta subunit 
(mitochondrial oligomycin sensitivity protein) 
[Energy production and conversion]
CD-Length = 178 residues, 100.0% aligned
Score =  160 bits (406), Expect = 9e-41
Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 1/178 (0%)

pfam00213, OSCP, ATP synthase delta (OSCP) subunit.
CD-Length = 172 residues, 100.0% aligned
Score =  118 bits (298), Expect = 3e-28
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 2/172 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8567




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25709




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33340




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4283_cdd.html


    		




 
URL:

















    ReferenceID:35556




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35576




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839

















    ReferenceID:35581




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236

















    ReferenceID:35583




  
Author/Investigator(s):
        Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K.





  
Title:
        The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.




  
PubMed:
        6278247


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(1):33-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6278247









           
Homologs By Global Alignment 

           

       



     
Gene ID:4283
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6595
                           PA5557_tr
                           translation of PA5557
                           178
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178189
                           gb|AAG08942.1|AE004967_13
                           (AE004967) ATP synthase delta chain [Pseudomonas aeruginosa PAO1]
                           178
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178190
                           gb|AAN70980.1|AE016742_9
                           (AE016794) ATP synthase F1, delta subunit [Pseudomonas putida KT2440]
                           178
                           78.08
                           88.76
                           0
                           686.0
     

     
     
178191
                           gb|AAO59015.1|
                           (AE016876) ATP synthase F1, delta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           75.84
                           89.88
                           0
                           678.0
     

     
     
178192
                           gb|AAN57709.1|AE015907_7
                           (AE015907) ATP synthase F1, delta subunit [Shewanella oneidensis MR-1]
                           178
                           50.00
                           71.91
                           1
                           434.0
     

     






      

          
GC ORFID: 47285How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5557Glimmer Score: 

          
Start: 5789640Stop: 5789104

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5557 translation of PA5557Homolog Bit Score 334.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4129 (ORF: BLASTX 266.0), t_PA5557 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGAACTGACCACGTTGGCTCGTCCCTACGCAAAGGCGGCTTTCGAGTACGCCCAGGCTCATCAGCAA 
CTGGCCGATTGGTCGGCTGCGCTGGGTGTGCTGGCCGCAGTGTCGCAGGACGACACCGTGCGCCAGCTGCTC 
AAAGAGCCTCAGCTGACCTCTTCGGCCAAGGCCCAGAGCCTGATCGATGTGTGCGGCGACAAGCTGAATGCA 
CCAGCCCAGAACTTCGTCCGGACTGTGGCTGAGAACAAGCGGCTCGAACTGCTGCCGACCATCGCTGAGATG 
TACGAGCAGTTGAAGGCCGAGCAGGAAAAGTCGGTCGAGGTAGAAGTCACCAGTGCCTTCACCTTGAGCAAA 
GAACAGCAGGACAAACTCGCCAAGGCTCTCAGCGCCCGGCTCAGTCGCGAAGTGCGGCTACATGCGTCGGAA 
GACGCGAGCCTGATCGGCGGCGTGATCATTCGCGCCGGTGACTTGGTAATCGATGGCTCGGTGCGCGGCAAG 
CTCGCGAAACTGGCCGAAGCGTTGAAATCTTGA