ViewGene

Locus Name:
GeneID:
Location:

GeneID:4282
TrivialName: PA14_60810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60810
PAO1 Ortholog Locus:PA4596
Sequence Length:519
Protein Length:172
Start: 5421533
Stop: 5422051
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07984.1|AE004873_6 (AE004873) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 171/172 (99%), Positives = 172/172 (100%)
Sequence:
ATGGTCAATCATCCGCGCGCCACCATGGGAGAACTGGCGGAACTGGCAGGAGTGAGCAGGGCAACCCTGAAC
CGTCATTGCGGTACCCGCGAAGGTCTCAAGCAGCGCCTGGAAAGCCATGCCAGGAGTACCCTCGAACGCCTC
ACCCACAGCGCCGCCCTGCAGCGCCTGGAGCCGCGGGAAGCGCTACGCGAGCTGATCCGGGAACACCTCGCC
CAGCGCGACCTGCTGGCGCTGCTGATGTTCGAGCAGAACCCGGGACGCCAGGCCGGGCATGGGGACGCCAGT
TGGCAGTCCTATGTCGAAGCCCTGGACGCCTTCTTCCTGCGCGGCCAACAGAAGCGTGTGTTCCGTATCGAT
ATCAGCGCGGCGACCTTCAGCGAACTCTTCATCGTCCTGATCTACGGCATGGTCGATGCCGAGCGCCGCGGT
CGCGCGGCCAGCGCCGGGTTGTCCGCCACGCTGGAGGAGCTGTTCCTGCGTGGCGCGTCGAACCCCGCACAA
CCTGCCAGCCCTTGA
Translation:
MVNHPRATMGELAELAGVSRATLNRHCGTREGLKQRLESHARSTLERLTHSAALQRLEPREALRELIREHLA
QRDLLALLMFEQNPGRQAGHGDASWQSYVEALDAFFLRGQQKRVFRIDISAATFSELFIVLIYGMVDAERRG
RAASAGLSATLEELFLRGASNPAQPASP*
AnnotationID:4288GeneID:4282
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator NfxB
Cell Localization:()
Synonyms:nfxB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68428.1|AE016475_7 (AE016784) transcriptional regulator NfxB [Pseudomonas putida
           KT2440]
          Length = 185

 Score =  166 bits (421), Expect = 4e-41
 Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

>gb|AAO56098.1| (AE016865) transcriptional regulatory protein NfxB [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 184

 Score =  148 bits (373), Expect = 2e-35
 Identities = 78/168 (46%), Positives = 106/168 (63%), Gaps = 1/168 (0%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8565
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25707
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4282

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6593 PA4596_tr translation of PA4596 172 99.41 99.99 0 857.0
178181 gb|AAG07984.1|AE004873_6 (AE004873) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 172 99.41 99.99 0 857.0
6594 PA4600_tr translation of PA4600 190 54.21 67.89 21 516.0
178182 gb|AAG07988.1|AE004874_1 (AE004874) transcriptional regulator NfxB [Pseudomonas aeruginosa PAO1] 190 54.21 67.89 21 516.0
178183 emb|CAA46598.1| (X65646) hypothetical protein [Pseudomonas aeruginosa] 190 53.68 67.36 21 511.0
GC ORFID: 47284How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4596Glimmer Score:
Start: 4685213Stop: 4685731
Length: 519
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4596 translation of PA4596Homolog Bit Score 334.0
Other Homologs: t_PA4600 (ORF: BLASTX 219.0), psyr_15may02_Scaffold1_revised_gene1250 (ORF: BLASTX 164.0), t_PA4596 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCAATCATCCGCGCGCCACCATGGGAGAACTGGCGGAACTGGCAGGAGTGAGCAGGGCAACCCTGAAC
CGTCATTGCGGTACCCGCGAAGGTCTCAAGCAGCGCCTGGAAAGCCATGCCAGGAGTACCCTCGAACGCCTC
ACCCACAGCGCCGCCCTGCAGCGCCTGGAGCCGCGGGAAGCGCTACGCGAGCTGATCCGGGAACACCTCGCC
CAGCGCGACCTGCTGGCGCTGCTGATGTTCGAGCAGAACCCGGGACGCCAGGCCGGGCATGGGGACGCCAGT
TGGCAGTCCTATGTCGAAGCCCTGGACGCCTTCTTCCTGCGCGGCCAACAGAAGCGTGTGTTCCGTATCGAT
ATCAGCGCGGCGACCTTCAGCGAACTCTTCATCGTCCTGATCTACGGCATGGTCGATGCCGAGCGCCGCGGT
CGCGCGGCCAGCGCCGGGTTGTCCGCCACGCTGGAGGAGCTGTTCCTGCGTGGCGCGTCGAACCCCGCACAA
CCTGCCAGCCCTTGA