ViewGene
Locus Name:
GeneID:
Location:

GeneID:4281
TrivialName: PA14_17520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17520
PAO1 Ortholog Locus:PA3618
Sequence Length:507
Protein Length:168
Start: 1504765
Stop: 1505271
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07006.1|AE004782_4 (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGACCCTGATGGAGTCCGACCTGACCGCACTGGCCGCCCGCCTCGGCGAAAGCCTTCGTTACCTGGGCGAG
CAGGTCAGCACGGCGGAATCCTGCACCGGTGGCGGCATCGCCGAGGCGATCACCCGCATCCCGGGGAGTTCG
GGCTGGTTCGAGGCTGGCTACGTGACCTACTCGAACCGCCAGAAGACCCTCCAGCTGGAGGTGCCCGAGTCG
CTGTTCCCGGCAGTCGGCGCGGTCAGCCGGGAAGTGGTCGAGGCCATGGTGCGCGGCGCCCAGCGGCACAGC
GGGGCGCGTTTCGCGGTGGCGGTGAGCGGTGTCGCCGGGCCCGACGGCGGCTCGCCGGAAAAGCCGGTAGGC
ACGGTCTGGCTGGCCTGGGCCGACGGCGAGCGGCTGGTCAGTGAGCGCTGCCAGTTCAACGGCGACCGCGAC
GCCGTGCGCCGGCAGACGGTGGCGACCGCGCTGACCGGCCTGCTGCGCATGAGCAACGGCGAGAACCCGGGC
TAG
Translation:
MTLMESDLTALAARLGESLRYLGEQVSTAESCTGGGIAEAITRIPGSSGWFEAGYVTYSNRQKTLQLEVPES
LFPAVGAVSREVVEAMVRGAQRHSGARFAVAVSGVAGPDGGSPEKPVGTVWLAWADGERLVSERCQFNGDRD
AVRRQTVATALTGLLRMSNGENPG*
AnnotationID:4287GeneID:4281
AnnotatorUID: diggins
Modification Date/Time: 2005-06-27 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative competence-damaged protein
Cell Localization:()
Synonyms:cinA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02464
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67249.1|AE016352_2 (AE016780) CinA domain protein [Pseudomonas putida KT2440]
          Length = 160

 Score =  240 bits (612), Expect = 3e-63
 Identities = 122/154 (79%), Positives = 132/154 (85%)

>gb|AAB60061.1| (U18785) YgaD [Escherichia coli]
          Length = 165

 Score =  151 bits (382), Expect = 1e-36
 Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 3/158 (1%)







 
Structural Features:
pfam02464, CinA, Competence-damaged protein.
CD-Length = 156 residues,  99.4% aligned
Score =  175 bits (445), Expect = 5e-45
Identities = 78/155 (50%), Positives = 104/155 (67%), Gaps = 1/155 (0%)






   
Genomic Context:






   
Comment:
other possible gene name: ygaD


















    ReferenceID:8563




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31924




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4281_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4281
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6592
                           PA3618_tr
                           translation of PA3618
                           168
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178122
                           gb|AAG07006.1|AE004782_4
                           (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178123
                           gb|AAN67249.1|AE016352_2
                           (AE016780) CinA domain protein [Pseudomonas putida KT2440]
                           168
                           72.61
                           78.57
                           8
                           605.0
     

     
     
178124
                           gb|AAB16920.1|
                           (U70864) unknown [Pseudomonas putida]
                           168
                           72.02
                           77.38
                           8
                           601.0
     

     
     
178125
                           gb|AAO57491.1|
                           (AE016870) cinA domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           170
                           65.88
                           74.11
                           6
                           550.0
     

     






      

          
GC ORFID: 47283How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3618Glimmer Score: 

          
Start: 3449172Stop: 3448666

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3618 translation of PA3618Homolog Bit Score 334.0

          
Other Homologs:  t_PA3618 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGATGGAGTCCGACCTGACCGCACTGGCCGCCCGCCTCGGCGAAAGCCTTCGTTACCTGGGCGAG 
CAGGTCAGCACGGCGGAATCCTGCACCGGTGGCGGCATCGCCGAGGCGATCACCCGCATCCCGGGGAGTTCG 
GGCTGGTTCGAGGCTGGCTACGTGACCTACTCGAACCGCCAGAAGACCCTCCAGCTGGAGGTGCCCGAGTCG 
CTGTTCCCGGCAGTCGGCGCGGTCAGCCGGGAAGTGGTCGAGGCCATGGTGCGCGGCGCCCAGCGGCACAGC 
GGGGCGCGTTTCGCGGTGGCGGTGAGCGGTGTCGCCGGGCCCGACGGCGGCTCGCCGGAAAAGCCGGTAGGC 
ACGGTCTGGCTGGCCTGGGCCGACGGCGAGCGGCTGGTCAGTGAGCGCTGCCAGTTCAACGGCGACCGCGAC 
GCCGTGCGCCGGCAGACGGTGGCGACCGCGCTGACCGGCCTGCTGCGCATGAGCAACGGCGAGAACCCGGGC 
TAG