ViewGene
Locus Name:
GeneID:
Location:

GeneID:428
TrivialName: PA14_52400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52400
PAO1 Ortholog Locus:PA0917
Sequence Length:1905
Protein Length:634
Start: 4651542
Stop: 4649638
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04306.1|AE004526_1 (AE004526) potassium uptake protein Kup [Pseudomonas aeruginosa PAO1]
Identities = 632/634 (99%), Positives = 632/634 (99%)
Sequence:
ATGAGTGATGCAGCGACGCGTGCCGAGGAGACGTCGGAGGGGCATTCCAGCTCTGCCATCGGCCTGATGGTC
GGGGCGGTTGGAGTCTGCTATGGGGATATCGGCACCAGTCCCTTGTATACCCTGAAAGAGGTCTTCATCGGC
GGCTACGGGGTGCAGGCCAACCACGATGGCGTCCTTGGCGTGCTGTCGCTGATCTTCTGGTCGCTGGTCTGG
GTCGTTTCCATCAAGTACGTGATCTTCGTCCTGCGTGCCGACAACCAGGGCGAGGGCGGGGTGATGGCGCTG
TCGGCCCTGGCGCGCCGGGCGGCGGCGCCGTTCGGCAGGCTGCAGACCTTCGTGGTGGTTGCCGGCCTGATC
GGCGCGGCGCTGTTCTACGGCGACAGCATGATCACCCCGGCGATCTCGGTACTGTCGGCGGTAGAAGGGCTG
GAGATCGCCTTCGACGGCCTGGAGCACTGGACGGTACCGCTGGCGCTTATCGTGCTGATCGGCCTGTTCCTG
ATCCAGAAGCACGGCACCGCGCGGATCGGCATCCTGTTCGGCCCGGTCATGGTGCTCTGGTTCGGCGCCCTG
GCGGCGCTGGGTGTCTACGGGGTGATCCAGCAGCCGGAAGTGCTGCAGGCGATGAACCCTGTATGGGCCGTG
CGTTTCTTCGGTTCGCATCCCGGCATCGGTGTCGCCATCCTCGGCGCCACCGTACTGGCGCTGACCGGCGCC
GAGGCGCTGTACGCCGACATGGGCCACTTCGGTCGCAAGCCGATCGCCCGTGCCTGGTTCCTGCTGGTGCTG
CCGGCGCTGGTGCTGAACTACTTCGGCCAGGGCGCGACCATCCTTTCCAACGCCGAGGCGGCGCGCAACCCC
TTCTACCTGCTGGCGCCGGGCTGGGCGCTGCTGCCGATGGTGGCGCTGTCCACCCTGGCCACGGTGATCGCC
TCCCAGGCGGTGATCTCCGGCGCCTTCTCCCTGACCCGCCAGGCCATCCAGCTCGGCTACGTGCCGCGGATG
ACCATCCAGCACACTTCCAGCCACGAGCAGGGGCAGATCTACATCGGCGGGGTGAATTGGGCGCTGATGGTC
GGCGTGGTCCTGCTGGTGCTCGGCTTCGAGTCCTCGGCGTCGCTGGCGGCGGCCTACGGCGTGGCGGTGACC
GGAACCATGCTGATCACCACCCTGCTGATGGGCGTGGTGATCTGGCGCCTGTGGAAATGGCCGCTGTGGCTG
GGTGTCCCGTTCTTCTGCGTGATGCTTGCGGTGGACAGCCTGTTCTTCGCCGCCAACCTGCCCAAGGTGATC
CAGGGCGGCGCCTTCCCGGTCATCGCGGGTATCGTCATCTTCATCCTGATGTCCACCTGGAAGCGTGGCCGC
CAACTGCTGGTGGAGCGTCTCGACGAGGGCTCGCTGCCGCTCTCGGTGTTCATTTCCAGCATGCGCGTGCAG
CCGCCGCACCGGGTCCAGGGGACCGCGGTGTTCCTGACCGCGCGTACCGACGCGGTGCCTCACGCGCTGCTG
CACAACCTGTTGCACAACCAGGTGCTGCACGAGCAGGTGGTGCTGCTCACCGTGGTCAACGAAGACAGCCCA
CGGGTTCCGCCGGATCGCCGTTTCGAGGTCGAGGCCTATGGCGACGGGTTCTTCCGGGTGATCCTGCACTTC
GGCTTCATGGAGGAGCCGGACATCCCGGCGGCCTTGCGCCTGTGCCATCTCAACGAACTGGACTTCAGTCCG
ATGCGCACCACCTACTTCCTCAGCCGGGAGACGGTGATTCCATCCAAGCGCATCGGCATGGCGCGCTGGCGC
GAGGGGCTGTTCGCCTTCCTGCTGAAGAACGCCAACGGCAACCTGCGCTATTTCAACCTGCCGCTCAACCGG
GTGATCGAGCTGGGAACCCAGGTCGAGATCTGA
Translation:
MSDAATRAEETSEGHSSSAIGLMVGAVGVCYGDIGTSPLYTLKEVFIGGYGVQANHDGVLGVLSLIFWSLVW
VVSIKYVIFVLRADNQGEGGVMALSALARRAAAPFGRLQTFVVVAGLIGAALFYGDSMITPAISVLSAVEGL
EIAFDGLEHWTVPLALIVLIGLFLIQKHGTARIGILFGPVMVLWFGALAALGVYGVIQQPEVLQAMNPVWAV
RFFGSHPGIGVAILGATVLALTGAEALYADMGHFGRKPIARAWFLLVLPALVLNYFGQGATILSNAEAARNP
FYLLAPGWALLPMVALSTLATVIASQAVISGAFSLTRQAIQLGYVPRMTIQHTSSHEQGQIYIGGVNWALMV
GVVLLVLGFESSASLAAAYGVAVTGTMLITTLLMGVVIWRLWKWPLWLGVPFFCVMLAVDSLFFAANLPKVI
QGGAFPVIAGIVIFILMSTWKRGRQLLVERLDEGSLPLSVFISSMRVQPPHRVQGTAVFLTARTDAVPHALL
HNLLHNQVLHEQVVLLTVVNEDSPRVPPDRRFEVEAYGDGFFRVILHFGFMEEPDIPAALRLCHLNELDFSP
MRTTYFLSRETVIPSKRIGMARWREGLFAFLLKNANGNLRYFNLPLNRVIELGTQVEI*
AnnotationID:437GeneID:428
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:34
Gene Name:kup
Confidence Code:2
GeneProduct:potassium uptake protein Kup
Cell Localization:(4) Inner membrane protein
Synonyms:PA0917
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3158, pfam02705
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]. Score: 869, 0.0
pfam02705, K_trans, K+ potassium transporter. Score: 509, 3e-145






   
Genomic Context:






   
Comment:


















    ReferenceID:859




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18001




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:428
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
718
                           PA0917_tr
                           translation of PA0917
                           634
                           99.68
                           99.68
                           0
                           3222.0
     

     
     
32251
                           gb|AAG04306.1|AE004526_1
                           (AE004526) potassium uptake protein Kup [Pseudomonas aeruginosa PAO1]
                           634
                           99.68
                           99.68
                           0
                           3222.0
     

     
     
32252
                           gb|AAN66824.1|AE016311_4
                           (AE016778) Kup system potassium uptake protein [Pseudomonas putida KT2440]
                           636
                           77.20
                           88.05
                           2
                           2594.0
     

     
     
32253
                           gb|AAO57452.1|
                           (AE016870) potassium uptake protein [Pseudomonas syringae pv. tomato str. DC3000]
                           634
                           76.02
                           87.06
                           3
                           2565.0
     

     
     
32254
                           gb|AAQ58249.1|
                           (AE016912) potassium uptake protein [Chromobacterium violaceum ATCC 12472]
                           635
                           56.06
                           72.12
                           15
                           1822.0
     

     






      

          
GC ORFID: 43430How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0917Glimmer Score: 

          
Start: 302365Stop: 304269

          
Length: 1905


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0917 translation of PA0917Homolog Bit Score 1245.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4670 (ORF: BLASTX 999.0), t_PA0917 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGATGCAGCGACGCGTGCCGAGGAGACGTCGGAGGGGCATTCCAGCTCTGCCATCGGCCTGATGGTC 
GGGGCGGTTGGAGTCTGCTATGGGGATATCGGCACCAGTCCCTTGTATACCCTGAAAGAGGTCTTCATCGGC 
GGCTACGGGGTGCAGGCCAACCACGATGGCGTCCTTGGCGTGCTGTCGCTGATCTTCTGGTCGCTGGTCTGG 
GTCGTTTCCATCAAGTACGTGATCTTCGTCCTGCGTGCCGACAACCAGGGCGAGGGCGGGGTGATGGCGCTG 
TCGGCCCTGGCGCGCCGGGCGGCGGCGCCGTTCGGCAGGCTGCAGACCTTCGTGGTGGTTGCCGGCCTGATC 
GGCGCGGCGCTGTTCTACGGCGACAGCATGATCACCCCGGCGATCTCGGTACTGTCGGCGGTAGAAGGGCTG 
GAGATCGCCTTCGACGGCCTGGAGCACTGGACGGTACCGCTGGCGCTTATCGTGCTGATCGGCCTGTTCCTG 
ATCCAGAAGCACGGCACCGCGCGGATCGGCATCCTGTTCGGCCCGGTCATGGTGCTCTGGTTCGGCGCCCTG 
GCGGCGCTGGGTGTCTACGGGGTGATCCAGCAGCCGGAAGTGCTGCAGGCGATGAACCCTGTATGGGCCGTG 
CGTTTCTTCGGTTCGCATCCCGGCATCGGTGTCGCCATCCTCGGCGCCACCGTACTGGCGCTGACCGGCGCC 
GAGGCGCTGTACGCCGACATGGGCCACTTCGGTCGCAAGCCGATCGCCCGTGCCTGGTTCCTGCTGGTGCTG 
CCGGCGCTGGTGCTGAACTACTTCGGCCAGGGCGCGACCATCCTTTCCAACGCCGAGGCGGCGCGCAACCCC 
TTCTACCTGCTGGCGCCGGGCTGGGCGCTGCTGCCGATGGTGGCGCTGTCCACCCTGGCCACGGTGATCGCC 
TCCCAGGCGGTGATCTCCGGCGCCTTCTCCCTGACCCGCCAGGCCATCCAGCTCGGCTACGTGCCGCGGATG 
ACCATCCAGCACACTTCCAGCCACGAGCAGGGGCAGATCTACATCGGCGGGGTGAATTGGGCGCTGATGGTC 
GGCGTGGTCCTGCTGGTGCTCGGCTTCGAGTCCTCGGCGTCGCTGGCGGCGGCCTACGGCGTGGCGGTGACC 
GGAACCATGCTGATCACCACCCTGCTGATGGGCGTGGTGATCTGGCGCCTGTGGAAATGGCCGCTGTGGCTG 
GGTGTCCCGTTCTTCTGCGTGATGCTTGCGGTGGACAGCCTGTTCTTCGCCGCCAACCTGCCCAAGGTGATC 
CAGGGCGGCGCCTTCCCGGTCATCGCGGGTATCGTCATCTTCATCCTGATGTCCACCTGGAAGCGTGGCCGC 
CAACTGCTGGTGGAGCGTCTCGACGAGGGCTCGCTGCCGCTCTCGGTGTTCATTTCCAGCATGCGCGTGCAG 
CCGCCGCACCGGGTCCAGGGGACCGCGGTGTTCCTGACCGCGCGTACCGACGCGGTGCCTCACGCGCTGCTG 
CACAACCTGTTGCACAACCAGGTGCTGCACGAGCAGGTGGTGCTGCTCACCGTGGTCAACGAAGACAGCCCA 
CGGGTTCCGCCGGATCGCCGTTTCGAGGTCGAGGCCTATGGCGACGGGTTCTTCCGGGTGATCCTGCACTTC 
GGCTTCATGGAGGAGCCGGACATCCCGGCGGCCTTGCGCCTGTGCCATCTCAACGAACTGGACTTCAGTCCG 
ATGCGCACCACCTACTTCCTCAGCCGGGAGACGGTGATTCCATCCAAGCGCATCGGCATGGCGCGCTGGCGC 
GAGGGGCTGTTCGCCTTCCTGCTGAAGAACGCCAACGGCAACCTGCGCTATTTCAACCTGCCGCTCAACCGG 
GTGATCGAGCTGGGAACCCAGGTCGAGATCTGA