ViewGene
Locus Name:
GeneID:
Location:

GeneID:4279
TrivialName: PA14_49260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49260
PAO1 Ortholog Locus:PA1173
Sequence Length:492
Protein Length:163
Start: 4375714
Stop: 4376205
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04562.1|AE004547_8 (AE004547) cytochrome c-type protein NapB precursor [Pseudomonas aeruginosa PAO1]
Identities = 163/163 (100%), Positives = 163/163 (100%)
Sequence:
ATGAAACCTCTGCTGACTGCCCTGCTCCTCGTCCTGCTCGGTGCCCCCGCGGCCTTCGCCGCCGACCTCGGC
TACCCGCTGGACGCGCCCGCCCCCGACGGCCGCCGCCCCGGCGGCACGCTGGCCGAAAGCCGCCCCGCGCCG
CCGCTGGCGGCCGAGGAAAACAAGGACCTGAAACGCGAGCGCAACTACCCCGAGCAGCCGCCGACCATTCCC
CACAGCATCGTCGGCTATCGCATCGACAAGGACAGCAACAAGTGCCTGTCCTGCCACAGCCGCGCCAACAGC
GCGCGAACCCAGGCGGTGATGATCAGCATCACCCACTACATGGACCGCGACGGCCAGCCGCTGGCCGCCGTC
TCGCCGCGCCGCTACTTCTGCGTGCAGTGCCATGTGCCGCAACAGGACGTAAAGCCGCTGGTCGACAACCGC
TTCGAGAACATCGACCAGATCCTCGAGAAAGAAGCCGCCAATGCGGCGCGCAAACCCTGA
Translation:
MKPLLTALLLVLLGAPAAFAADLGYPLDAPAPDGRRPGGTLAESRPAPPLAAEENKDLKRERNYPEQPPTIP
HSIVGYRIDKDSNKCLSCHSRANSARTQAVMISITHYMDRDGQPLAAVSPRRYFCVQCHVPQQDVKPLVDNR
FENIDQILEKEAANAARKP*
AnnotationID:4285GeneID:4279
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:47
Gene Name:napB
Confidence Code:2
GeneProduct:cytochrome c-type protein NapB precursor
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3043
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism.
Homology:






 
Structural Features:
Probable N-terminal signal sequence






   
Genomic Context:
Fifth of six ORF cluster: napEFDABC.






   
Comment:


















    ReferenceID:8559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16969




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:napB_CDS.cgi


    		




 
URL:

















    ReferenceID:25701




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4279
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6590
                           PA1173_tr
                           translation of PA1173
                           163
                           99.99
                           99.99
                           0
                           857.0
     

     
     
178080
                           gb|AAG04562.1|AE004547_8
                           (AE004547) cytochrome c-type protein NapB precursor [Pseudomonas aeruginosa PAO1]
                           163
                           99.99
                           99.99
                           0
                           857.0
     

     
     
178083
                           emb|CAE33293.1|
                           (BX640445) diheme cytochrome C precursor [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           168
                           51.19
                           64.28
                           15
                           394.0
     

     
     
178084
                           emb|CAE37994.1|
                           (BX640431) diheme cytochrome C precursor [Bordetella parapertussis]
                           168
                           51.19
                           64.28
                           15
                           394.0
     

     
     
178081
                           gb|AAP85964.1|
                           (AY305378) periplasmic nitrate reductase small subunit [Ralstonia eutropha]
                           173
                           49.71
                           61.27
                           14
                           403.0
     

     






      

          
GC ORFID: 47281How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1173Glimmer Score: 

          
Start: 578194Stop: 577703

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1173 translation of PA1173Homolog Bit Score 334.0

          
Other Homologs:  t_PA1173 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCTCTGCTGACTGCCCTGCTCCTCGTCCTGCTCGGTGCCCCCGCGGCCTTCGCCGCCGACCTCGGC 
TACCCGCTGGACGCGCCCGCCCCCGACGGCCGCCGCCCCGGCGGCACGCTGGCCGAAAGCCGCCCCGCGCCG 
CCGCTGGCGGCCGAGGAAAACAAGGACCTGAAACGCGAGCGCAACTACCCCGAGCAGCCGCCGACCATTCCC 
CACAGCATCGTCGGCTATCGCATCGACAAGGACAGCAACAAGTGCCTGTCCTGCCACAGCCGCGCCAACAGC 
GCGCGAACCCAGGCGGTGATGATCAGCATCACCCACTACATGGACCGCGACGGCCAGCCGCTGGCCGCCGTC 
TCGCCGCGCCGCTACTTCTGCGTGCAGTGCCATGTGCCGCAACAGGACGTAAAGCCGCTGGTCGACAACCGC 
TTCGAGAACATCGACCAGATCCTCGAGAAAGAAGCCGCCAATGCGGCGCGCAAACCCTGA