ViewGene
Locus Name:
GeneID:
Location:

GeneID:4278
TrivialName: PA14_59320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59320
PAO1 Ortholog Locus:
Sequence Length:531
Protein Length:176
Start: 5284818
Stop: 5285348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84205.1| (AY273869) PilS2 [Pseudomonas aeruginosa]
Identities = 176/176 (100%), Positives = 176/176 (100%)
Sequence:
ATGAGCACTACGCAACGCACTTCCCGTCCGACGCAGGGCGGTTTCGTTTCCATCGAGATGATCATCGTGCTG
ATCATCATCGCCATCGGGGTCGGCCTGGGCCTGGCCGCAGCGGCTGGAATGTTCAGTTCGTCCAACGCCAAC
GAGGAACAACGCAACATCAGCGTCATTGCGGCCAACGCACGCGCCCTGAAGACCTCTTCGGGCTACGGCTCC
AGCGGTACCAACCTGATCCCCAGCCTGATCGCAATCAACGGCGTGCCGAAGAACATGAGTGTCTCCTCCGGC
GTCGTCTACAACGTCTACGGCGGATCGGTCACTGTCTCGTCCACCGGCATGGGCTTCTCGATCACCACCAGC
AAGTTGCCCCAGGACGCCTGTATCACGCTGGCCACCAAGATCGCGAAGAACACCTTCGAGCAGACCAAAATC
AACAGCGGATCCTCGATCACCGGAGAAGTGACCACCGCAGCCGCGACCCAGGCCTGCAGCAGCGACAGCAAC
AGCATTACCTGGACCTATAGTTCGTGA
Translation:
MSTTQRTSRPTQGGFVSIEMIIVLIIIAIGVGLGLAAAAGMFSSSNANEEQRNISVIAANARALKTSSGYGS
SGTNLIPSLIAINGVPKNMSVSSGVVYNVYGGSVTVSSTGMGFSITTSKLPQDACITLATKIAKNTFEQTKI
NSGSSITGEVTTAAATQACSSDSNSITWTYSS*
AnnotationID:4284GeneID:4278
AnnotatorUID: diggins
Modification Date/Time: 2006-02-03 06:06:56
Gene Name:
Confidence Code:3
GeneProduct:type IV B pilus protein
Cell Localization:()
Synonyms:pilS2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8557




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25699




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38317




  
Author/Investigator(s):
        Yoshida T, Kim SR, Komano T.





  
Title:
        Twelve pil genes are required for biogenesis of the R64 thin pilus.




  
PubMed:
        10094679


MedLine:
        




    
Source:
J Bacteriol. 1999 Apr;181(7):2038-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=10094679

















    ReferenceID:38318




  
Author/Investigator(s):
        Sakai D, Komano T.





  
Title:
        Genes required for plasmid R64 thin-pilus biogenesis: identification and localization of products of the pilK, pilM, pilO, pilP, pilR, and pilT genes.




  
PubMed:
        11751821


MedLine:
        




    
Source:
J Bacteriol. 2002 Jan;184(2):444-51.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=11751821









           
Homologs By Global Alignment 

           

       



     
Gene ID:4278
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
178079
                           gb|AAP84205.1|
                           (AY273869) PilS2 [Pseudomonas aeruginosa]
                           176
                           99.99
                           99.99
                           0
                           859.0
     

     






      

          
GC ORFID: 47280How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL080Glimmer Score: 

          
Start: 4548497Stop: 4549027

          
Length: 531


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL080 pilS 176 Homolog: PilS / Type IVB pilus biosynthesis; Pathogenicity-related / Plasmid ColIb-P9 (BAA75180) translation of RL080Homolog Bit Score 335.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1591 (ORF: BLASTX 174.0), t_RL080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACTACGCAACGCACTTCCCGTCCGACGCAGGGCGGTTTCGTTTCCATCGAGATGATCATCGTGCTG 
ATCATCATCGCCATCGGGGTCGGCCTGGGCCTGGCCGCAGCGGCTGGAATGTTCAGTTCGTCCAACGCCAAC 
GAGGAACAACGCAACATCAGCGTCATTGCGGCCAACGCACGCGCCCTGAAGACCTCTTCGGGCTACGGCTCC 
AGCGGTACCAACCTGATCCCCAGCCTGATCGCAATCAACGGCGTGCCGAAGAACATGAGTGTCTCCTCCGGC 
GTCGTCTACAACGTCTACGGCGGATCGGTCACTGTCTCGTCCACCGGCATGGGCTTCTCGATCACCACCAGC 
AAGTTGCCCCAGGACGCCTGTATCACGCTGGCCACCAAGATCGCGAAGAACACCTTCGAGCAGACCAAAATC 
AACAGCGGATCCTCGATCACCGGAGAAGTGACCACCGCAGCCGCGACCCAGGCCTGCAGCAGCGACAGCAAC 
AGCATTACCTGGACCTATAGTTCGTGA