ViewGene
Locus Name:
GeneID:
Location:

GeneID:4275
TrivialName: PA14_25130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25130
PAO1 Ortholog Locus:PA3010
Sequence Length:519
Protein Length:172
Start: 2199364
Stop: 2199882
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06398.1|AE004726_4 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/172 (99%), Positives = 172/172 (100%)
Sequence:
ATGGCCCAAGAGCTTTATACCCGCACCAACCAGAAGCTGTATTTCGCCGGGTTGGCTCTGGAGGCCTGGAAG
CGAGCCGATGCCGAGCGGGCGATGAATGCCCAGGCGATCATCCAGGGGGAGCGCGAATCGGCGCTGTTCCAC
CTTTATGGCGCAGTGCTCGGTGTATGCCATGAGATCGCCGGTTACTACCGTCTGCCGCAGGCTGCCGCTCCT
CGCGTGGATGCATTGCTGAATGCCGAAGTGCTGGCGGCCGCGCCCAGCCCCGAGCTGGCTGAGCTGGTGGAG
TTGGCGTCGCAGCCGGAAACCTGGCTGGGCCAGTTGCTGGGCGCCTACTCCGAGCTGTTCCTGCCGCCGCGA
CCGACCAAGGCAGCGAAGATCGACCCCAGCACACCGTTGATCGTTGCCGTGAGTATCGACGAAGACGCCCCC
TTGCTTTCTCGCGAGACCCTCGAGGAATGGCGGCAGTCGCTGAAGCAACTGGTCCTGCGTTTTCGCGAGAGC
CTGACGGAGCTGTAA
Translation:
MAQELYTRTNQKLYFAGLALEAWKRADAERAMNAQAIIQGERESALFHLYGAVLGVCHEIAGYYRLPQAAAP
RVDALLNAEVLAAAPSPELAELVELASQPETWLGQLLGAYSELFLPPRPTKAAKIDPSTPLIVAVSIDEDAP
LLSRETLEEWRQSLKQLVLRFRESLTEL*
AnnotationID:4281GeneID:4275
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3010
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8551




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25693




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4275
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6581
                           PA3010_tr
                           translation of PA3010
                           172
                           99.41
                           99.99
                           0
                           859.0
     

     
     
177938
                           gb|AAG06398.1|AE004726_4
                           (AE004726) hypothetical protein PA3010 [Pseudomonas aeruginosa PAO1]
                           172
                           99.41
                           99.99
                           0
                           859.0
     

     
     
177939
                           gb|AAO56988.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           173
                           61.84
                           75.14
                           1
                           525.0
     

     
     
177940
                           gb|AAN67753.1|AE016406_8
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           199
                           52.26
                           64.32
                           29
                           510.0
     

     






      

          
GC ORFID: 47277How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3010Glimmer Score: 

          
Start: 2754563Stop: 2754045

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3010 translation of PA3010Homolog Bit Score 335.0

          
Other Homologs:  t_PA3010 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCAAGAGCTTTATACCCGCACCAACCAGAAGCTGTATTTCGCCGGGTTGGCTCTGGAGGCCTGGAAG 
CGAGCCGATGCCGAGCGGGCGATGAATGCCCAGGCGATCATCCAGGGGGAGCGCGAATCGGCGCTGTTCCAC 
CTTTATGGCGCAGTGCTCGGTGTATGCCATGAGATCGCCGGTTACTACCGTCTGCCGCAGGCTGCCGCTCCT 
CGCGTGGATGCATTGCTGAATGCCGAAGTGCTGGCGGCCGCGCCCAGCCCCGAGCTGGCTGAGCTGGTGGAG 
TTGGCGTCGCAGCCGGAAACCTGGCTGGGCCAGTTGCTGGGCGCCTACTCCGAGCTGTTCCTGCCGCCGCGA 
CCGACCAAGGCAGCGAAGATCGACCCCAGCACACCGTTGATCGTTGCCGTGAGTATCGACGAAGACGCCCCC 
TTGCTTTCTCGCGAGACCCTCGAGGAATGGCGGCAGTCGCTGAAGCAACTGGTCCTGCGTTTTCGCGAGAGC 
CTGACGGAGCTGTAA