ViewGene
Locus Name:
GeneID:
Location:

GeneID:4274
TrivialName: PA14_29060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29060
PAO1 Ortholog Locus:PA2713
Sequence Length:480
Protein Length:159
Start: 2514283
Stop: 2514762
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06101.1|AE004699_6 (AE004699) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 159/159 (100%), Positives = 159/159 (100%)
Sequence:
ATGAAATGGCAAGAAGTCGGCGAAACGCCCTGTTCGATGGCGCGCAGCCTGGCGATCCTCGGCGACCGCTGG
ACGCTGCTGATCCTGCGCAACTGCTTTCTCGGCATGCGCCGCTTCGATGAGTTCCAGGCCAGCCTCGGGGTC
ACCCGTCAGGTACTGGCCGACCGCCTGAGCCGGCTGGTGGAGGCGGGCGCGCTGAAGAAGGTGCCTTACCAG
GAGCGACCGCCGCGCTACGAGTACCGCCTCACCGAGATGGGCCACGACCTGCATCCGGTGCTGCTGGCCCTG
GCCAACTGGGGCGACCGCTGGCTCGACGAGGGCCGCGGCGCTCCGGTGGAGTATGTGCACAAGGCCTGTGGC
CACAAGTTCCGGCCGACCATGGTTTGCCCGGAGTGCGGCGAGCCGGTGGGGTCGCGCGATGTGACGGCGGTG
CCGGGGCCGGGGTTCGCGGCGATGGCTGGCAAGCTCGCGCAGAACTGA
Translation:
MKWQEVGETPCSMARSLAILGDRWTLLILRNCFLGMRRFDEFQASLGVTRQVLADRLSRLVEAGALKKVPYQ
ERPPRYEYRLTEMGHDLHPVLLALANWGDRWLDEGRGAPVEYVHKACGHKFRPTMVCPECGEPVGSRDVTAV
PGPGFAAMAGKLAQN*
AnnotationID:4280GeneID:4274
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 10:10:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2713
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1733,pfam01638
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC47869.1| (AP005944) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 182

 Score =  171 bits (434), Expect = 1e-42
 Identities = 75/148 (50%), Positives = 107/148 (72%)








 
Structural Features:
COG1733, COG1733, Predicted transcriptional regulators [Transcription]
CD-Length = 120 residues, 100.0% aligned
Score =  125 bits (315), Expect = 2e-30
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 1/120 (0%)

pfam01638, DUF24, Transcriptional regulator.
CD-Length = 91 residues,  97.8% aligned
Score = 94.5 bits (235), Expect = 5e-21
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 1/89 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36313




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4274_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4274
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6579
                           PA2713_tr
                           translation of PA2713
                           159
                           99.99
                           99.99
                           0
                           859.0
     

     
     
177922
                           gb|AAG06101.1|AE004699_6
                           (AE004699) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           159
                           99.99
                           99.99
                           0
                           859.0
     

     
     
6580
                           PA0116_tr
                           translation of PA0116
                           160
                           60.62
                           73.12
                           4
                           508.0
     

     
     
177923
                           gb|AAG03506.1|AE004450_1
                           (AE004450) hypothetical protein PA0116 [Pseudomonas aeruginosa PAO1]
                           160
                           60.62
                           73.12
                           4
                           508.0
     

     
     
177926
                           emb|CAD18270.1|
                           (AL646083) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           164
                           45.73
                           64.63
                           7
                           390.0
     

     






      

          
GC ORFID: 47276How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2713Glimmer Score: 

          
Start: 2439643Stop: 2439164

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2713 translation of PA2713Homolog Bit Score 335.0

          
Other Homologs:  t_PA0116 (ORF: BLASTX 201.0), t_PA2713 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATGGCAAGAAGTCGGCGAAACGCCCTGTTCGATGGCGCGCAGCCTGGCGATCCTCGGCGACCGCTGG 
ACGCTGCTGATCCTGCGCAACTGCTTTCTCGGCATGCGCCGCTTCGATGAGTTCCAGGCCAGCCTCGGGGTC 
ACCCGTCAGGTACTGGCCGACCGCCTGAGCCGGCTGGTGGAGGCGGGCGCGCTGAAGAAGGTGCCTTACCAG 
GAGCGACCGCCGCGCTACGAGTACCGCCTCACCGAGATGGGCCACGACCTGCATCCGGTGCTGCTGGCCCTG 
GCCAACTGGGGCGACCGCTGGCTCGACGAGGGCCGCGGCGCTCCGGTGGAGTATGTGCACAAGGCCTGTGGC 
CACAAGTTCCGGCCGACCATGGTTTGCCCGGAGTGCGGCGAGCCGGTGGGGTCGCGCGATGTGACGGCGGTG 
CCGGGGCCGGGGTTCGCGGCGATGGCTGGCAAGCTCGCGCAGAACTGA