ViewGene
Locus Name:
GeneID:
Location:

GeneID:4272
TrivialName: PA14_50930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50930
PAO1 Ortholog Locus:PA1036
Sequence Length:561
Protein Length:186
Start: 4525763
Stop: 4525203
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04425.1|AE004536_4 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 175/186 (94%), Positives = 177/186 (95%)
Sequence:
ATGAGCCGCTTTGAAATCGCCTTTTCCGGCCAGTTGGTCGCCGGCGCCCGGCCCGAGGTGGTCAAGGCCAAC
CTGGCCAAGCTGTTCCAGGCCGACGCGCAGCGTATCGAACTGCTGTTCTCCGGCCGCCGGGTGGTGATCAAG
AACAACCTCGATGCCGCCTCCGCGGAAAAATACCGCAGCGTGCTGGAGCGAGCGGGAGCGATCGCCGTGGTC
GCCGAGATGGAGATCGAGGAGGTGGTCATGGCGCCGCCGCCTGCGCAGCAGGCCGCCGTGGAAGCCCCACAG
GCCCGCGTCGCTGCGCGGGACAGCGCGCCCTCCGGGCGTTTGCAGGTAGCGCCGCGGGACGGCTACATGGCG
GCGTTCGCCGAGGTCGATGCGCCGGATTTCGGCCTGGCTCCGGTAGGCGCCGACCTACAGGACGCCAAGGCC
GAAGCCGAGGCGCCGAAGCTCGATCTGAGCCGCTTCAGCGTCGCCCCGGTCGGTAGCGACATGGGCCAGGCA
CGCCCCGAGCCAGCGGCTCCGGCTCCGGACACCAGCCACCTGCGCCTGCAGGACTGA
Translation:
MSRFEIAFSGQLVAGARPEVVKANLAKLFQADAQRIELLFSGRRVVIKNNLDAASAEKYRSVLERAGAIAVV
AEMEIEEVVMAPPPAQQAAVEAPQARVAARDSAPSGRLQVAPRDGYMAAFAEVDAPDFGLAPVGADLQDAKA
EAEAPKLDLSRFSVAPVGSDMGQARPEPAAPAPDTSHLRLQD*
AnnotationID:4278GeneID:4272
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1036
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25687




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4272
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6577
                           PA1036_tr
                           translation of PA1036
                           186
                           94.08
                           95.16
                           0
                           860.0
     

     
     
177917
                           gb|AAG04425.1|AE004536_4
                           (AE004536) hypothetical protein PA1036 [Pseudomonas aeruginosa PAO1]
                           186
                           94.08
                           95.16
                           0
                           860.0
     

     
     
177918
                           gb|AAO57585.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           191
                           57.59
                           71.72
                           13
                           535.0
     

     






      

          
GC ORFID: 47274How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1036Glimmer Score: 

          
Start: 428145Stop: 428705

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1036 translation of PA1036Homolog Bit Score 335.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6290 (ORF: BLASTX 199.0), t_PA1036 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCTTTGAAATCGCCTTTTCCGGCCAGTTGGTCGCCGGCGCCCGGCCCGAGGTGGTCAAGGCCAAC 
CTGGCCAAGCTGTTCCAGGCCGACGCGCAGCGTATCGAACTGCTGTTCTCCGGCCGCCGGGTGGTGATCAAG 
AACAACCTCGATGCCGCCTCCGCGGAAAAATACCGCAGCGTGCTGGAGCGAGCGGGAGCGATCGCCGTGGTC 
GCCGAGATGGAGATCGAGGAGGTGGTCATGGCGCCGCCGCCTGCGCAGCAGGCCGCCGTGGAAGCCCCACAG 
GCCCGCGTCGCTGCGCGGGACAGCGCGCCCTCCGGGCGTTTGCAGGTAGCGCCGCGGGACGGCTACATGGCG 
GCGTTCGCCGAGGTCGATGCGCCGGATTTCGGCCTGGCTCCGGTAGGCGCCGACCTACAGGACGCCAAGGCC 
GAAGCCGAGGCGCCGAAGCTCGATCTGAGCCGCTTCAGCGTCGCCCCGGTCGGTAGCGACATGGGCCAGGCA 
CGCCCCGAGCCAGCGGCTCCGGCTCCGGACACCAGCCACCTGCGCCTGCAGGACTGA