ViewGene

Locus Name:
GeneID:
Location:

GeneID:4271
TrivialName: PA14_08210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08210
PAO1 Ortholog Locus:PA0633
Sequence Length:495
Protein Length:164
Start: 702227
Stop: 702721
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04022.1|AE004499_1 (AE004499) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/164 (100%), Positives = 164/164 (100%)
Sequence:
ATGTCCATCCTGACTCAAGGTACCCAGATCTACGCCCTGGTTCCGCCGGTATCCGGTACCGGTGCCGCTACC
GTCCTGGAGATCGAAGGCGTGACCTCGTTCAACCCGGGCGGCAATCCGGCCGACCAGATCGAAGACCCGTGC
CTGAGCGACACTTCGCGCAAGTACAAGAAAGGCCTGCGCACCCCTGGCCAGGCGACCCTCGGCATCAACGCC
GATCCACGCCTGGCCAGTCACGTTCGGTTGTTCCAGCTGTCCGAGAAAGATGGCGAGACGAGCGTCAAGTGG
GCCATCGGCTGGTCCGACGGAATCGACGTAAAGCCGACCGTCAGCACCGAAGGCGACGATTTCGTGCTGCCG
CCGGCGCGCACCTGGTTCACCTTCGAAGGCTACGTCAGCGACTTCCCCTTCGATTTCGCCAGCAACACGCTG
GTCGCTACCCAGGCCACCATCCAGCGTTCCGGCGCCGGCAAGTGGACGCCGAAGTCGGCTTGA
Translation:
MSILTQGTQIYALVPPVSGTGAATVLEIEGVTSFNPGGNPADQIEDPCLSDTSRKYKKGLRTPGQATLGINA
DPRLASHVRLFQLSEKDGETSVKWAIGWSDGIDVKPTVSTEGDDFVLPPARTWFTFEGYVSDFPFDFASNTL
VATQATIQRSGAGKWTPKSA*
AnnotationID:4277GeneID:4271
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:putative major tail protein V
Cell Localization:()
Synonyms:PA0633
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN55969.1|AE015735_3 (AE015735) prophage LambdaSo, major tail protein V, putative
           [Shewanella oneidensis MR-1]
          Length = 157

 Score =  129 bits (324), Expect = 7e-30
 Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 9/155 (5%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8543
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25685
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4271

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6576 PA0633_tr translation of PA0633 164 99.99 99.99 0 862.0
177912 gb|AAG04022.1|AE004499_1 (AE004499) hypothetical protein PA0633 [Pseudomonas aeruginosa PAO1] 164 99.99 99.99 0 862.0
177913 dbj|BAA83140.1| (AB030826) PRF28~similar to V gene of lambda and gene13 of N15 (major tail protein) [Pseudomonas aeruginosa] 164 99.99 99.99 0 862.0
177914 dbj|BAA83172.1| (AB030825) PRF28~similar to V gene of lambda and gene13 of N15: major tail protein [Pseudomonas aeruginosa] 164 99.99 99.99 0 862.0
177916 gb|AAN55969.1|AE015735_3 (AE015735) prophage LambdaSo, major tail protein V, putative [Shewanella oneidensis MR-1] 167 43.11 59.88 13 332.0
GC ORFID: 47273How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0633Glimmer Score:
Start: 6503570Stop: 6504064
Length: 495
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0633 translation of PA0633Homolog Bit Score 336.0
Other Homologs: t_PA0633 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCATCCTGACTCAAGGTACCCAGATCTACGCCCTGGTTCCGCCGGTATCCGGTACCGGTGCCGCTACC
GTCCTGGAGATCGAAGGCGTGACCTCGTTCAACCCGGGCGGCAATCCGGCCGACCAGATCGAAGACCCGTGC
CTGAGCGACACTTCGCGCAAGTACAAGAAAGGCCTGCGCACCCCTGGCCAGGCGACCCTCGGCATCAACGCC
GATCCACGCCTGGCCAGTCACGTTCGGTTGTTCCAGCTGTCCGAGAAAGATGGCGAGACGAGCGTCAAGTGG
GCCATCGGCTGGTCCGACGGAATCGACGTAAAGCCGACCGTCAGCACCGAAGGCGACGATTTCGTGCTGCCG
CCGGCGCGCACCTGGTTCACCTTCGAAGGCTACGTCAGCGACTTCCCCTTCGATTTCGCCAGCAACACGCTG
GTCGCTACCCAGGCCACCATCCAGCGTTCCGGCGCCGGCAAGTGGACGCCGAAGTCGGCTTGA