ViewGene

Locus Name:
GeneID:
Location:

GeneID:4270
TrivialName: PA14_40780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40780
PAO1 Ortholog Locus:PA1837
Sequence Length:498
Protein Length:165
Start: 3639513
Stop: 3640010
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05226.1|AE004609_13 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/165 (100%), Positives = 165/165 (100%)
Sequence:
ATGCAGCGAATCATTAAGGACCGCCAGGTGGTCGACGACCGCTGGCACTTGCTGCCCAAGGACGCGACCCTG
GAAAGCGTGCCCAACAGCGACGACGTGATCATCCCGCTGGCCCTGTGGCTCGAGCACGGCCCGGCCCTGCGC
GGCCGCGACGGTGGCCTGGGGGTCTGGCTGGACGCGGACGAGGAGCCGGAAAGCATCGCCGGTGACCTCGAC
AGGTTCCAGGTGATCGCGGTGAACTTCCCCGCCTTTACCGATGGCCGCGGCTTCAGCAGCGCGCGCCTGCTG
CGCGAGCGCTACGGCTACAAGGGCGAGATCCGCGCGATCGGCGACGTGCTGCGCGACCAGCTGTTCTTCATG
CGCCGCTGCGGCTTCGACGCCTACGCCATCCGTGCCGACCGCAGCCCGGAAGACGCCCTGGCCAGCCTGGAC
GACTTCAGCGAGGTCTACCAGACCTCGGTGGAGCAGCCGCTGCCGCTGTTCCGCCGCCGCGGCTGA
Translation:
MQRIIKDRQVVDDRWHLLPKDATLESVPNSDDVIIPLALWLEHGPALRGRDGGLGVWLDADEEPESIAGDLD
RFQVIAVNFPAFTDGRGFSSARLLRERYGYKGEIRAIGDVLRDQLFFMRRCGFDAYAIRADRSPEDALASLD
DFSEVYQTSVEQPLPLFRRRG*
AnnotationID:4276GeneID:4270
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1837
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8541
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25683
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37057
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4270_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4270

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6574 PA1837_tr translation of PA1837 165 99.99 99.99 0 862.0
177905 gb|AAG05226.1|AE004609_13 (AE004609) hypothetical protein PA1837 [Pseudomonas aeruginosa PAO1] 165 99.99 99.99 0 862.0
177906 gb|AAO56230.1| (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 165 70.90 85.45 1 653.0
177907 gb|AAN67983.1|AE016430_7 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 165 66.06 81.21 1 611.0
6575 PA4129_tr translation of PA4129 173 45.08 59.53 19 357.0
GC ORFID: 47272How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1837Glimmer Score:
Start: 1314397Stop: 1313900
Length: 498
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1837 translation of PA1837Homolog Bit Score 336.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene112 (ORF: BLASTX 253.0), t_PA4129 (ORF: BLASTX 137.0), t_PA1837 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGCGAATCATTAAGGACCGCCAGGTGGTCGACGACCGCTGGCACTTGCTGCCCAAGGACGCGACCCTG
GAAAGCGTGCCCAACAGCGACGACGTGATCATCCCGCTGGCCCTGTGGCTCGAGCACGGCCCGGCCCTGCGC
GGCCGCGACGGTGGCCTGGGGGTCTGGCTGGACGCGGACGAGGAGCCGGAAAGCATCGCCGGTGACCTCGAC
AGGTTCCAGGTGATCGCGGTGAACTTCCCCGCCTTTACCGATGGCCGCGGCTTCAGCAGCGCGCGCCTGCTG
CGCGAGCGCTACGGCTACAAGGGCGAGATCCGCGCGATCGGCGACGTGCTGCGCGACCAGCTGTTCTTCATG
CGCCGCTGCGGCTTCGACGCCTACGCCATCCGTGCCGACCGCAGCCCGGAAGACGCCCTGGCCAGCCTGGAC
GACTTCAGCGAGGTCTACCAGACCTCGGTGGAGCAGCCGCTGCCGCTGTTCCGCCGCCGCGGCTGA