ViewGene

Locus Name:
GeneID:
Location:

GeneID: 427

TrivialName: PA14_68360

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_68360

PAO1 Ortholog Locus: PA5174

Sequence Length: 1905

Protein Length: 634

Start: 6098345

Stop: 6100249

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08559.1|AE004930_5 (AE004930) probable beta-ketoacyl synthase [Pseudomonas aeruginosa PAO1] Identities = 632/634 (99%), Positives = 634/634 (100%)

Sequence:

ATGTCTCGACTACCGGTCATTGTTGGTTTCGGTGGCTACAACGCAGCAGGCCGTAGTTCCTTCCACCACGGC
TTCCGTCGCATGGTCATCGAATCGATGGACCCGCAGGCGCGCCAGGAAACCCTAGCCGGCCTGGCGGTCATG
ATGAAACTGGTCAAGGCCGAAGGCGGCCGCTACCTGGCCGAAGACGGCACGCCGCTGTCCCCGGAGGACATC
GAGCGGCGCTACGCCGAACGCATCTTCGCCTCTACCCTGGTGCGACGCATCGAACCGCGGTACCTCGACCCG
GATGCCGTCCACTGGCACAAGGTCCTCGAGCTGTCCCCTGCCGAAGGCCAGGCGCTGACCTTCAAGGCCTCG
CCCAAGCAACTGCCCGAGCCGCTGCCGGCCAACTGGTCGATCGCTCCCGCGGAGGATGGCGAGGTACTGGTG
AGCATCCACGAGCGCTGCGAGTTCAAGGTCGACAGCTACCGTGCGCTGACGGTGAAGTCCGCTGGCCAGCTG
CCCACCGGTTTCGAACCGGGCGAGCTGTACAACTCGCGCTTCCACCCGCGCGGCCTGCAGATGTCGGTGGTC
GCCGCGACCGACGCGATCCGCTCCACCGGCATCGACTGGAAGACCATCGTCGACAACGTCCAGCCCGACGAG
ATCGCGGTGTTCTCCGGCAGCATCATGAGCCAGCTCGACGACAACGGTTTCGGCGGCCTGATGCAATCCCGC
CTGAAGGGCCACCGGGTCTCGGCCAAGCAACTGCCGCTGGGCTTCAACAGCATGCCCACCGATTTCATCAAT
GCCTACGTGCTCGGCAGCGTCGGCATGACCGGCAGCATCACAGGCGCCTGCGCCACCTTCCTCTACAACCTG
CAGAAGGGTATCGACGTCATCACCAGCGGCCAGGCCCGGGTGGTCATCGTCGGCAACAGCGAGGCGCCGATC
CTGCCGGAGTGCATCGAGGGCTACAGCGCCATGGGCGCACTGGCCACCGAAGAAGGCCTGCGCCTGATCGAA
GGCCGCGACGACGTGGACTTCCGCCGCGCCAGCCGGCCGTTCGGCGAGAACTGCGGCTTCACCCTGGCCGAG
TCCAGCCAGTACGTAGTGCTGATGGACGACGAACTGGCCCTGCGCCTGGGCGCGGATATCCACGGCGCGGTA
ACCGACGTGTTCATCAACGCCGACGGTTTCAAGAAGTCCATCTCCGCCCCCGGCCCGGGCAACTACCTGACG
GTAGCCAAGGCGGTGGCCAGCGCGGTGCAGATCGTCGGCCTGGACACCGTGCGCCACGCCAGCTTCGTCCAC
GCCCACGGCTCCAGCACGCCGGCCAACCGGGTCACCGAATCGGAAATCCTCGACCGCGTGGCCAGCGCCTTC
GGCATCGACGGCTGGCCGGTCACCGCGGTGAAGGCCTACGTCGGCCACTCCCTGGCCACCGCCAGCGCCGAC
CAGCTGATCTCCGCCCTAGGCACGTTCAAGTACGGCATCCTCCCTGGGATCAAGACCATCGACAAGGTCGCC
GACGACGTCCACCAGCAGCGCCTGAGCATCTCCAATCGCGACATGCGCCAGGACAAGCCGCTGGAGGTATGC
TTCATCAACTCCAAGGGCTTCGGCGGCAACAACGCCAGCGGCGTGGTGCTGTCGCCGCGAATCGCCGAGAAG
ATGCTGCGCAAGCGCCATGGCCAAGCGGCCTTCGCCGCCTACGTCGAGAAGCGCGAGCAGACCCGCGCCGCC
GCCCGCGCCTACGACCAGCGCGCGCTGCGGGGCGACCTGGAGATCATCTACAACTTCGGCCAGGACCTGATC
GACGAGCACGCCATCGAGGTCAGCGCCGAACAGGTGACGGTGCCCGGCTTCAGCCAGCCGCTGGTATACAAG
AAGGACGCGCGTTTCAGCGACATGCTCGACTGA

Translation:

MSRLPVIVGFGGYNAAGRSSFHHGFRRMVIESMDPQARQETLAGLAVMMKLVKAEGGRYLAEDGTPLSPEDI
ERRYAERIFASTLVRRIEPRYLDPDAVHWHKVLELSPAEGQALTFKASPKQLPEPLPANWSIAPAEDGEVLV
SIHERCEFKVDSYRALTVKSAGQLPTGFEPGELYNSRFHPRGLQMSVVAATDAIRSTGIDWKTIVDNVQPDE
IAVFSGSIMSQLDDNGFGGLMQSRLKGHRVSAKQLPLGFNSMPTDFINAYVLGSVGMTGSITGACATFLYNL
QKGIDVITSGQARVVIVGNSEAPILPECIEGYSAMGALATEEGLRLIEGRDDVDFRRASRPFGENCGFTLAE
SSQYVVLMDDELALRLGADIHGAVTDVFINADGFKKSISAPGPGNYLTVAKAVASAVQIVGLDTVRHASFVH
AHGSSTPANRVTESEILDRVASAFGIDGWPVTAVKAYVGHSLATASADQLISALGTFKYGILPGIKTIDKVA
DDVHQQRLSISNRDMRQDKPLEVCFINSKGFGGNNASGVVLSPRIAEKMLRKRHGQAAFAAYVEKREQTRAA
ARAYDQRALRGDLEIIYNFGQDLIDEHAIEVSAEQVTVPGFSQPLVYKKDARFSDMLD*

AnnotationID:436 GeneID:427

AnnotatorUID: diggins

Modification Date/Time: 2005-03-15 16:04:13

Gene Name:

Confidence Code: 3

GeneProduct: putative beta-ketoacyl synthase

Cell Localization: ()

Synonyms: PA5174

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (13) Fatty acid and phospholipid metabolism

Alternate Gene Product Name: putative 3-oxoacyl-(acyl-carrier-protein) synthase

Functional Category Confidence Code: 5

COGs: COG0304

Secondary Functional Category(ies): Secondary metabolites biosynthesis, transport, and catabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 412 residues,  88.3% aligned
Score =  228 bits (583), Expect = 2e-60
Identities = 121/388 (31%), Positives = 176/388 (45%), Gaps = 27/388 (6%)

Genomic Context:

Comment:

ReferenceID:857

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17999

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34888

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 427_cdd.html

URL:

Homologs By Global Alignment

Gene ID:427

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

717 PA5174_tr translation of PA5174 634 99.68 99.99 0 3231.0

32250 gb|AAG08559.1|AE004930_5 (AE004930) probable beta-ketoacyl synthase [Pseudomonas aeruginosa PAO1] 634 99.68 99.99 0 3231.0

GC ORFID: `43429`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5174`	Glimmer Score:
Start: `5362031`	Stop: `5363935`
Length: `1905`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5174 translation of PA5174`	Homolog Bit Score `1249.0`
Other Homologs: `t_PA5174 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCTCGACTACCGGTCATTGTTGGTTTCGGTGGCTACAACGCAGCAGGCCGTAGTTCCTTCCACCACGGC TTCCGTCGCATGGTCATCGAATCGATGGACCCGCAGGCGCGCCAGGAAACCCTAGCCGGCCTGGCGGTCATG ATGAAACTGGTCAAGGCCGAAGGCGGCCGCTACCTGGCCGAAGACGGCACGCCGCTGTCCCCGGAGGACATC GAGCGGCGCTACGCCGAACGCATCTTCGCCTCTACCCTGGTGCGACGCATCGAACCGCGGTACCTCGACCCG GATGCCGTCCACTGGCACAAGGTCCTCGAGCTGTCCCCTGCCGAAGGCCAGGCGCTGACCTTCAAGGCCTCG CCCAAGCAACTGCCCGAGCCGCTGCCGGCCAACTGGTCGATCGCTCCCGCGGAGGATGGCGAGGTACTGGTG AGCATCCACGAGCGCTGCGAGTTCAAGGTCGACAGCTACCGTGCGCTGACGGTGAAGTCCGCTGGCCAGCTG CCCACCGGTTTCGAACCGGGCGAGCTGTACAACTCGCGCTTCCACCCGCGCGGCCTGCAGATGTCGGTGGTC GCCGCGACCGACGCGATCCGCTCCACCGGCATCGACTGGAAGACCATCGTCGACAACGTCCAGCCCGACGAG ATCGCGGTGTTCTCCGGCAGCATCATGAGCCAGCTCGACGACAACGGTTTCGGCGGCCTGATGCAATCCCGC CTGAAGGGCCACCGGGTCTCGGCCAAGCAACTGCCGCTGGGCTTCAACAGCATGCCCACCGATTTCATCAAT GCCTACGTGCTCGGCAGCGTCGGCATGACCGGCAGCATCACAGGCGCCTGCGCCACCTTCCTCTACAACCTG CAGAAGGGTATCGACGTCATCACCAGCGGCCAGGCCCGGGTGGTCATCGTCGGCAACAGCGAGGCGCCGATC CTGCCGGAGTGCATCGAGGGCTACAGCGCCATGGGCGCACTGGCCACCGAAGAAGGCCTGCGCCTGATCGAA GGCCGCGACGACGTGGACTTCCGCCGCGCCAGCCGGCCGTTCGGCGAGAACTGCGGCTTCACCCTGGCCGAG TCCAGCCAGTACGTAGTGCTGATGGACGACGAACTGGCCCTGCGCCTGGGCGCGGATATCCACGGCGCGGTA ACCGACGTGTTCATCAACGCCGACGGTTTCAAGAAGTCCATCTCCGCCCCCGGCCCGGGCAACTACCTGACG GTAGCCAAGGCGGTGGCCAGCGCGGTGCAGATCGTCGGCCTGGACACCGTGCGCCACGCCAGCTTCGTCCAC GCCCACGGCTCCAGCACGCCGGCCAACCGGGTCACCGAATCGGAAATCCTCGACCGCGTGGCCAGCGCCTTC GGCATCGACGGCTGGCCGGTCACCGCGGTGAAGGCCTACGTCGGCCACTCCCTGGCCACCGCCAGCGCCGAC CAGCTGATCTCCGCCCTAGGCACGTTCAAGTACGGCATCCTCCCTGGGATCAAGACCATCGACAAGGTCGCC GACGACGTCCACCAGCAGCGCCTGAGCATCTCCAATCGCGACATGCGCCAGGACAAGCCGCTGGAGGTATGC TTCATCAACTCCAAGGGCTTCGGCGGCAACAACGCCAGCGGCGTGGTGCTGTCGCCGCGAATCGCCGAGAAG ATGCTGCGCAAGCGCCATGGCCAAGCGGCCTTCGCCGCCTACGTCGAGAAGCGCGAGCAGACCCGCGCCGCC GCCCGCGCCTACGACCAGCGCGCGCTGCGGGGCGACCTGGAGATCATCTACAACTTCGGCCAGGACCTGATC GACGAGCACGCCATCGAGGTCAGCGCCGAACAGGTGACGGTGCCCGGCTTCAGCCAGCCGCTGGTATACAAG AAGGACGCGCGTTTCAGCGACATGCTCGACTGA