ViewGene

Locus Name:
GeneID:
Location:

GeneID:4269
TrivialName: PA14_11350
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11350
PAO1 Ortholog Locus:
Sequence Length:663
Protein Length:220
Start: 987321
Stop: 986659
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54229.1| (AE016858) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 171/217 (78%), Positives = 183/217 (84%). N-terminus matches PA4059 and C-terminus matches PA4060 of PAO1.
Sequence:
GTGACGGCACCCCAAGCCCTGACCCAGGCGCTGGGCGAGCTGCTCGGCGACGCCCGGCTCAGCGCCACCGCG
CTGCCCGGCACCGACCTGCGCCTGTGGCTGATCGACGCGCAGAACATGGACCGCCAGTTCAGCCCGGAGGAA
ACCCGCCGCATCCTCGAAGAGCCGCCGTACTGGTGCTTCTGCTGGGCCAGCGGGCTGGTCCTGGCGCGCTGG
CTGGCGGAGCGCCCGCAGTGGGTCCGCGACAAGCGCGTGCTGGACTTCGGCAGCGGCTCCGGGGTGGCGGCG
ATCGCCGCGGCCCGCGCCGGCGCCGCCGAGGTGGTGGCTTGCGACCTGGATCCCCTGGCGCTGGCAGCGAGC
CGGGCGAACGCCGAACTGAACGGAGTGGAGCTGAGCTATTCGGCGGACTTCTTCGCCGAGGACGATCGCTTC
GACCTGATCTTGGTGGCCGACGTGCTCTACGACCGCGCCAACCTGCCGCTGCTCGACCAGTTCCTCAGCCGC
GGCCGCCAGGCGCTGGTCGCCGACTCGCGGGTCCGTGACTTCCGTCATCCGCTGTACCGGCGCCTGGACGTG
CTCGACGCCTGTACCTGGCCGGACCTCGCCGAACCCGCCGAATTCCGCCTGGTCAGCCTGTATCACGCCGAA
CGCGGGCAAGCCTGA
Translation:
MTAPQALTQALGELLGDARLSATALPGTDLRLWLIDAQNMDRQFSPEETRRILEEPPYWCFCWASGLVLARW
LAERPQWVRDKRVLDFGSGSGVAAIAAARAGAAEVVACDLDPLALAASRANAELNGVELSYSADFFAEDDRF
DLILVADVLYDRANLPLLDQFLSRGRQALVADSRVRDFRHPLYRRLDVLDACTWPDLAEPAEFRLVSLYHAE
RGQA*
AnnotationID:4275GeneID:4269
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 14:02:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical phypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
N-terminus matches PA4059 and C-terminus matches PA4060 of
PAO1 (both are hypothetical proteins).
Structural Features:
Genomic Context:
Comment:
Confirmed frameshift, addition of additional C at position 987008 (gcgccgCcgaggtg). 
 Results in a fusion of PAO1 genes PA4059 and PA4060 into one ORF.
ReferenceID:15054
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25681
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4269

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
177896 gb|AAO54229.1| (AE016858) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000] 220 77.27 83.18 3 862.0
6572 PA4059_tr translation of PA4059 220 49.09 49.09 95 532.0
177897 gb|AAG07446.1|AE004822_6 (AE004822) hypothetical protein PA4059 [Pseudomonas aeruginosa PAO1] 220 48.63 49.09 95 529.0
6573 PA4060_tr translation of PA4060 220 41.36 41.81 128 470.0
177898 gb|AAG07447.1|AE004822_7 (AE004822) hypothetical protein PA4060 [Pseudomonas aeruginosa PAO1] 220 40.90 41.81 128 467.0
GC ORFID: 47271How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold4_revised_gene5830Glimmer Score:
Start: 3966616Stop: 3967278
Length: 663
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: psyr_15may02_Scaffold4_revised_gene5830 related to: gi|15599254|ref|NP_252748.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||C83138 hypothetical protein PA4059 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07446.1|AE004822_6 (Homolog Bit Score 336.0
Other Homologs: t_PA4060 (ORF: BLASTX 185.0), psyr_15may02_Scaffold4_revised_gene5830 (ORF: GLIMMER)
GC ORF Sequence
GTGACGGCACCCCAAGCCCTGACCCAGGCGCTGGGCGAGCTGCTCGGCGACGCCCGGCTCAGCGCCACCGCG
CTGCCCGGCACCGACCTGCGCCTGTGGCTGATCGACGCGCAGAACATGGACCGCCAGTTCAGCCCGGAGGAA
ACCCGCCGCATCCTCGAAGAGCCGCCGTACTGGTGCTTCTGCTGGGCCAGCGGGCTGGTCCTGGCGCGCTGG
CTGGCGGAGCGCCCGCAGTGGGTCCGCGACAAGCGCGTGCTGGACTTCGGCAGCGGCTCCGGGGTGGCGGCG
ATCGCCGCGGCCCGCGCCGGCGCCGCCGAGGTGGTGGCTTGCGACCTGGATCCCCTGGCGCTGGCAGCGAGC
CGGGCGAACGCCGAACTGAACGGAGTGGAGCTGAGCTATTCGGCGGACTTCTTCGCCGAGGACGATCGCTTC
GACCTGATCTTGGTGGCCGACGTGCTCTACGACCGCGCCAACCTGCCGCTGCTCGACCAGTTCCTCAGCCGC
GGCCGCCAGGCGCTGGTCGCCGACTCGCGGGTCCGTGACTTCCGTCATCCGCTGTACCGGCGCCTGGACGTG
CTCGACGCCTGTACCTGGCCGGACCTCGCCGAACCCGCCGAATTCCGCCTGGTCAGCCTGTATCACGCCGAA
CGCGGGCAAGCCTGA