ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4268

TrivialName: PA14_05270

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05270

PAO1 Ortholog Locus: PA0403

Sequence Length: 513

Protein Length: 170

Start: 460965

Stop: 460453

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03792.1|AE004477_9 (AE004477) transcriptional regulator PyrR [Pseudomonas aeruginosa PAO1] Identities = 170/170 (100%), Positives = 170/170 (100%)

Sequence:

ATGAGCCTACCCAATCCCGCCGAACTCCTGCCGCGCATGGCCAGCGACCTGCGCGCCCATCTCGCCGAGCGA
GGCATCGAGCGGCCGCGCTTCGTCGGCATCCACACCGGCGGCATCTGGGTCGCCGAGGCGCTGCTGAGGGAA
CTGGGCAACCAAGAGCCGCTGGGCACCCTCGACGTCTCCTTCTACCGCGACGACTTCACCCAGAACGGCCTG
CATCCGCAGGTCCGCCCGTCGGCGCTGCCGTTCGAGATCGACGGCCAGCACCTGGTGCTGGTGGACGACGTG
CTGATGAGCGGCCGCACCATCCGCGCCGCGCTCAACGAACTGTTCGACTACGGCCGTCCGGCCAGCGTGACC
CTGGTCTGCCTGCTCGACCTGAACGCCCGGGAGTTGCCTATCCGCCCCGACGTGGTCGGCCAGACCCTGTCC
CTGGGTCGCGATGAACGGGTAAAATTGGTCGGTCCCGCACCGCTCGCCCTCGAGCGCAAGGTCCTTTCCTCC
GCTTCCTGA

Translation:

MSLPNPAELLPRMASDLRAHLAERGIERPRFVGIHTGGIWVAEALLRELGNQEPLGTLDVSFYRDDFTQNGL
HPQVRPSALPFEIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTLS
LGRDERVKLVGPAPLALERKVLSSAS*

AnnotationID:4274 GeneID:4268

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 18:06:00

Gene Name: pyrR

Confidence Code: 2

GeneProduct: transcriptional regulator PyrR

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name: uracil phosphoribosyltransferase PyrR

Functional Category Confidence Code: 5

COGs: COG2065

Secondary Functional Category(ies): Nucleotide biosynthesis and metabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8537

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17044

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA0403_CDS.cgi

URL:

ReferenceID:25679

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4268

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6571 PA0403_tr translation of PA0403 170 99.99 99.99 0 864.0

177873 gb|AAG03792.1|AE004477_9 (AE004477) transcriptional regulator PyrR [Pseudomonas aeruginosa PAO1] 170 99.99 99.99 0 864.0

177874 gb|AAD34602.1|AF148692_1 (AF148692) pyrimidine regulatory protein PyrR [Pseudomonas aeruginosa] 170 99.99 99.99 0 864.0

177876 gb|AAO58467.1| (AE016874) pyrimidine operon regulatory protein PyrR [Pseudomonas syringae pv. tomato str. DC3000] 170 78.23 88.23 0 691.0

177875 gb|AAN70563.1|AE016699_4 (AE016792) transcriptional regulator PyrR [Pseudomonas putida KT2440] 172 77.90 87.79 2 695.0

GC ORFID: `47270`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0403`	Glimmer Score:
Start: `6262307`	Stop: `6261795`
Length: `513`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0403 translation of PA0403`	Homolog Bit Score `337.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3713 (ORF: BLASTX 269.0), t_PA0403 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCTACCCAATCCCGCCGAACTCCTGCCGCGCATGGCCAGCGACCTGCGCGCCCATCTCGCCGAGCGA GGCATCGAGCGGCCGCGCTTCGTCGGCATCCACACCGGCGGCATCTGGGTCGCCGAGGCGCTGCTGAGGGAA CTGGGCAACCAAGAGCCGCTGGGCACCCTCGACGTCTCCTTCTACCGCGACGACTTCACCCAGAACGGCCTG CATCCGCAGGTCCGCCCGTCGGCGCTGCCGTTCGAGATCGACGGCCAGCACCTGGTGCTGGTGGACGACGTG CTGATGAGCGGCCGCACCATCCGCGCCGCGCTCAACGAACTGTTCGACTACGGCCGTCCGGCCAGCGTGACC CTGGTCTGCCTGCTCGACCTGAACGCCCGGGAGTTGCCTATCCGCCCCGACGTGGTCGGCCAGACCCTGTCC CTGGGTCGCGATGAACGGGTAAAATTGGTCGGTCCCGCACCGCTCGCCCTCGAGCGCAAGGTCCTTTCCTCC GCTTCCTGA