ViewGene
Locus Name:
GeneID:
Location:

GeneID:4267
TrivialName: PA14_32150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32150
PAO1 Ortholog Locus:PA2513
Sequence Length:492
Protein Length:163
Start: 2796516
Stop: 2796025
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK52292.1| (AY026914) putative anthranilate dioxygenase small subunit AntB [Pseudomonas putida]
Identities = 161/163 (98%), Positives = 161/163 (98%)
Sequence:
ATGAACGCCGGACTGCAGTACCGCGTCGAACAGTTCCTCTACCGCCACGCCGAACTCTGCGATGCCCAGGAC
TGGGACGGCTACCTCGCGCAGTTCGACGAACAGTGCGAGTTCCACCTGCCGCAGTGGGAGTCCGAGCACCGC
TACACCCGCGATCCGAAGCGCGAGATGTCGCTGATCTACTACCCCAGCCGTGCCGGCCTGGAAGACCGGGTG
TTCCGTATCCGCACCGGCAAGGCCGCGTCCACCGTGCCGATGCCGCGCACCCTGCACCAGATCGGCAACGTG
CGCATCGCCGAGGAAGGCGAAGGCCTGCTGCGAGTGCGGGTCAACTGGCAGACCCTGTTCCAGCGCCTGGAC
CAGACCGGCAGCTTCTTCGGCCATGCCACCTACCGCCTGAAACCCCATGGCGAGGCCTGGCTGATCGCGCGC
AAGCACATCGTCCTGCTCAACGACCGGATCGACTCGGTCCTCGACTTCTACCACCTCTGA
Translation:
MNAGLQYRVEQFLYRHAELCDAQDWDGYLAQFDEQCEFHLPQWESEHRYTRDPKREMSLIYYPSRAGLEDRV
FRIRTGKAASTVPMPRTLHQIGNVRIAEEGEGLLRVRVNWQTLFQRLDQTGSFFGHATYRLKPHGEAWLIAR
KHIVLLNDRIDSVLDFYHL*
AnnotationID:4273GeneID:4267
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 17:05:03
Gene Name:antB
Confidence Code:2
GeneProduct:anthranilate dioxygenase small subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5517,cd00667,pfam00866
Secondary Functional Category(ies):carbon compond metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK52292.1| (AY026914) putative anthranilate dioxygenase small subunit AntB
           [Pseudomonas putida]
          Length = 163

 Score =  339 bits (869), Expect = 4e-93
 Identities = 161/163 (98%), Positives = 161/163 (98%)

>dbj|BAC41525.1| (AB088420) small subunit of terminal oxygenase component of
           anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
          Length = 163

 Score =  253 bits (646), Expect = 3e-67
 Identities = 118/163 (72%), Positives = 134/163 (82%)

>gb|AAC34814.1| (AF071556) anthranilate dioxygenase small subunit [Acinetobacter
           sp. ADP1]
          Length = 163

 Score =  195 bits (496), Expect = 8e-50
 Identities = 88/163 (53%), Positives = 117/163 (71%)






 
Structural Features:
COG5517, COG5517, Small subunit of phenylpropionate dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 164 residues,  99.4% aligned
Score =  219 bits (560), Expect = 1e-58
Identities = 91/163 (55%), Positives = 113/163 (69%)

cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase 
beta subunit.
CD-Length = 160 residues,  99.4% aligned
Score =  153 bits (389), Expect = 8e-39
Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

pfam00866, Ring_hydroxyl_B, Ring hydroxylating beta subunit. 
CD-Length = 145 residues, 100.0% aligned
Score =  148 bits (374), Expect = 4e-37
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 2/145 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25677




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33062




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4267_cdd.html


    		




 
URL:

















    ReferenceID:34509




  
Author/Investigator(s):
        Bundy BM, Campbell AL, Neidle EL.





  
Title:
        Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1.




  
PubMed:
        9721284


MedLine:
        




    
Source:
J Bacteriol. 1998 Sep;180(17):4466-74.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9721284









           
Homologs By Global Alignment 

           

       



     
Gene ID:4267
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
177849
                           gb|AAK52292.1|
                           (AY026914) putative anthranilate dioxygenase small subunit AntB [Pseudomonas putida]
                           163
                           98.77
                           98.77
                           0
                           869.0
     

     
     
6569
                           PA2513_tr
                           translation of PA2513
                           163
                           98.15
                           98.77
                           0
                           864.0
     

     
     
177850
                           gb|AAG05901.1|AE004678_7
                           (AE004678) anthranilate dioxygenase small subunit [Pseudomonas aeruginosa PAO1]
                           163
                           98.15
                           98.77
                           0
                           864.0
     

     
     
177851
                           dbj|BAC41525.1|
                           (AB088420) small subunit of terminal oxygenase component of anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
                           163
                           72.39
                           82.20
                           0
                           646.0
     

     
     
177852
                           dbj|BAB32746.1|
                           (AB047548) small subunit of terminal oxygenase component of anthranilate 1,2-dioxygenase [Pseudomonas resinovorans]
                           163
                           72.39
                           82.20
                           0
                           646.0
     

     






      

          
GC ORFID: 47269How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2513Glimmer Score: 

          
Start: 2157408Stop: 2157899

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2513 translation of PA2513Homolog Bit Score 337.0

          
Other Homologs:  t_PA2517 (ORF: BLASTX 145.0), t_PA2513 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCGGACTGCAGTACCGCGTCGAACAGTTCCTCTACCGCCACGCCGAACTCTGCGATGCCCAGGAC 
TGGGACGGCTACCTCGCGCAGTTCGACGAACAGTGCGAGTTCCACCTGCCGCAGTGGGAGTCCGAGCACCGC 
TACACCCGCGATCCGAAGCGCGAGATGTCGCTGATCTACTACCCCAGCCGTGCCGGCCTGGAAGACCGGGTG 
TTCCGTATCCGCACCGGCAAGGCCGCGTCCACCGTGCCGATGCCGCGCACCCTGCACCAGATCGGCAACGTG 
CGCATCGCCGAGGAAGGCGAAGGCCTGCTGCGAGTGCGGGTCAACTGGCAGACCCTGTTCCAGCGCCTGGAC 
CAGACCGGCAGCTTCTTCGGCCATGCCACCTACCGCCTGAAACCCCATGGCGAGGCCTGGCTGATCGCGCGC 
AAGCACATCGTCCTGCTCAACGACCGGATCGACTCGGTCCTCGACTTCTACCACCTCTGA