ViewGene
Locus Name:
GeneID:
Location:

GeneID:4266
TrivialName: PA14_36880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36880
PAO1 Ortholog Locus:PA2141
Sequence Length:519
Protein Length:172
Start: 3287226
Stop: 3286708
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05529.1|AE004641_8 (AE004641) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGCCCGACCTGCAACTCGCGGATGAGGCCTCTCGCCTGGTGGCCTACCTGCGTAGCGCCGACCTCAGCCTG
ATCACCGCGGAATCCTGTACTGCCGGGCAGATCAGCGCCGAACTGTCGGCGGTGGCCGGCAGCGGCAAGGTG
ATGGAAGGCGGCTTCGTCGTCTATTCGCCGGCGGCCAAGCTTGCCCTGCTGGGGCTCGACCCGAACTGGCTG
GAGCGTTTCAACCTGACCAGCGTGGAGGTCGCCGAGGCCATGGCCAGGGCGGCCCTGCAACGCAGTCCGGCG
AGCGCCGCGCTGGCGGTCACGGGGTTGCTCGGCAGTGAAGCGAAGGACGGCATCCCGCCCGGTACCGTGTGC
TTTGCCTGGGCCTTCCGGTTGCCCGCCGGCCTCGCCCTGTTCTCGCGCCGCGAGCGCTTCCATGGCGACCCC
GCGCGGATGCGCCGGGAAGCCACCCGCTGGGCGCTGCGGCGCCTGCCCGAATTCCATCAACGCGCCTTGCGC
GGCGAACGCGCCTGA
Translation:
MPDLQLADEASRLVAYLRSADLSLITAESCTAGQISAELSAVAGSGKVMEGGFVVYSPAAKLALLGLDPNWL
ERFNLTSVEVAEAMARAALQRSPASAALAVTGLLGSEAKDGIPPGTVCFAWAFRLPAGLALFSRRERFHGDP
ARMRREATRWALRRLPEFHQRALRGERA*
AnnotationID:4272GeneID:4266
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 13:01:41
Gene Name:
Confidence Code:3
GeneProduct:putative ompetence-damaged protein
Cell Localization:()
Synonyms:PA2141
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1546,pfam02464
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68905.1|AE016522_2 (AE016786) CinA domain protein [Pseudomonas putida KT2440]
          Length = 167

 Score =  144 bits (363), Expect = 2e-34
 Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 5/167 (2%)








 
Structural Features:
COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced)
CD-Length = 162 residues,  96.3% aligned
Score =  146 bits (370), Expect = 1e-36
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

pfam02464, CinA, Competence-damaged protein.
CD-Length = 156 residues,  94.9% aligned
Score =  107 bits (269), Expect = 6e-25
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 4/151 (2%)






   
Genomic Context:






   
Comment:
Confirmed frame-shift leads to truncation of last 10 amino acids of PAO1 PA2141.


















    ReferenceID:8533




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25675




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32583




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4266_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4266
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6568
                           PA2141_tr
                           translation of PA2141
                           182
                           94.50
                           94.50
                           10
                           863.0
     

     
     
177846
                           gb|AAG05529.1|AE004641_8
                           (AE004641) hypothetical protein PA2141 [Pseudomonas aeruginosa PAO1]
                           182
                           94.50
                           94.50
                           10
                           863.0
     

     
     
177847
                           gb|AAN68905.1|AE016522_2
                           (AE016786) CinA domain protein [Pseudomonas putida KT2440]
                           174
                           45.97
                           62.06
                           9
                           366.0
     

     
     
177848
                           emb|CAE37962.1|
                           (BX640431) hypothetical protein [Bordetella parapertussis]
                           251
                           29.08
                           41.03
                           90
                           304.0
     

     






      

          
GC ORFID: 47268How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2141Glimmer Score: 

          
Start: 1666688Stop: 1667206

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2141 translation of PA2141Homolog Bit Score 337.0

          
Other Homologs:  t_PA2141 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGACCTGCAACTCGCGGATGAGGCCTCTCGCCTGGTGGCCTACCTGCGTAGCGCCGACCTCAGCCTG 
ATCACCGCGGAATCCTGTACTGCCGGGCAGATCAGCGCCGAACTGTCGGCGGTGGCCGGCAGCGGCAAGGTG 
ATGGAAGGCGGCTTCGTCGTCTATTCGCCGGCGGCCAAGCTTGCCCTGCTGGGGCTCGACCCGAACTGGCTG 
GAGCGTTTCAACCTGACCAGCGTGGAGGTCGCCGAGGCCATGGCCAGGGCGGCCCTGCAACGCAGTCCGGCG 
AGCGCCGCGCTGGCGGTCACGGGGTTGCTCGGCAGTGAAGCGAAGGACGGCATCCCGCCCGGTACCGTGTGC 
TTTGCCTGGGCCTTCCGGTTGCCCGCCGGCCTCGCCCTGTTCTCGCGCCGCGAGCGCTTCCATGGCGACCCC 
GCGCGGATGCGCCGGGAAGCCACCCGCTGGGCGCTGCGGCGCCTGCCCGAATTCCATCAACGCGCCTTGCGC 
GGCGAACGCGCCTGA